Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.22■□□□□ 0.83
Col1a1P11087 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col1a1P11087 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col1a1P11087 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col1a1P11087 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col1a1P11087 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col1a1P11087 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col1a1P11087 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col1a1P11087 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC20.21■□□□□ 0.83
Col1a1P11087 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC20.21■□□□□ 0.83
Col1a1P11087 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC20.21■□□□□ 0.83
Col1a1P11087 Rps4l-201ENSMUST00000071745 943 ntBASIC20.21■□□□□ 0.83
Col1a1P11087 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col1a1P11087 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC20.21■□□□□ 0.83
Col1a1P11087 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col1a1P11087 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Col1a1P11087 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC20.2■□□□□ 0.82
Col1a1P11087 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Col1a1P11087 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC20.2■□□□□ 0.82
Col1a1P11087 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Col1a1P11087 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col1a1P11087 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC20.19■□□□□ 0.82
Col1a1P11087 Gm11452-201ENSMUST00000122376 690 ntBASIC20.19■□□□□ 0.82
Col1a1P11087 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col1a1P11087 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC20.19■□□□□ 0.82
Col1a1P11087 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col1a1P11087 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col1a1P11087 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col1a1P11087 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col1a1P11087 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col1a1P11087 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Col1a1P11087 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col1a1P11087 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC20.19■□□□□ 0.82
Col1a1P11087 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC20.18■□□□□ 0.82
Col1a1P11087 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC20.18■□□□□ 0.82
Col1a1P11087 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Col1a1P11087 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col1a1P11087 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Col1a1P11087 Gm43073-201ENSMUST00000198200 1189 ntBASIC20.18■□□□□ 0.82
Col1a1P11087 Gm18206-201ENSMUST00000207027 926 ntBASIC20.18■□□□□ 0.82
Col1a1P11087 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.17■□□□□ 0.82
Col1a1P11087 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 AC161829.1-201ENSMUST00000220298 281 ntBASIC20.17■□□□□ 0.82
Col1a1P11087 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col1a1P11087 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col1a1P11087 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col1a1P11087 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.16■□□□□ 0.82
Col1a1P11087 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col1a1P11087 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Col1a1P11087 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col1a1P11087 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC20.16■□□□□ 0.82
Col1a1P11087 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col1a1P11087 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Col1a1P11087 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC20.16■□□□□ 0.82
Col1a1P11087 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC20.16■□□□□ 0.82
Col1a1P11087 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Col1a1P11087 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col1a1P11087 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC20.15■□□□□ 0.82
Col1a1P11087 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col1a1P11087 Gm12644-201ENSMUST00000119935 606 ntBASIC20.15■□□□□ 0.82
Col1a1P11087 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col1a1P11087 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col1a1P11087 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
Col1a1P11087 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col1a1P11087 Gm37935-201ENSMUST00000192012 982 ntBASIC20.15■□□□□ 0.82
Col1a1P11087 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col1a1P11087 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Col1a1P11087 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.15■□□□□ 0.82
Col1a1P11087 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Col1a1P11087 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col1a1P11087 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.14■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms