Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 EPB41L2-228ENST00000531410 2926 ntTSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 PRR27-201ENST00000344526 3127 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 TREML2-201ENST00000483722 3302 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 ZMYND8-218ENST00000540497 3405 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 STAG3-202ENST00000394018 4163 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 LARP7-201ENST00000324052 2164 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 HEPACAM2-203ENST00000440868 2060 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 TFG-204ENST00000476228 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 COLGALT2-203ENST00000367521 4723 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 SOCS5P4-201ENST00000454743 1566 ntBASIC8.03□□□□□ -1.12
MSX1P28360 OR7E24-201ENST00000456448 1550 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
MSX1P28360 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 RASSF6-203ENST00000342081 4331 ntAPPRIS P4 TSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 CLEC2A-201ENST00000339766 732 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 IL37-203ENST00000349806 589 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 RNY4P24-201ENST00000362735 96 ntBASIC8.03□□□□□ -1.12
MSX1P28360 SNORD3G-201ENST00000362796 215 ntBASIC8.03□□□□□ -1.12
MSX1P28360 CENPW-202ENST00000368326 443 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC8.03□□□□□ -1.12
MSX1P28360 UQCRHP2-201ENST00000415651 288 ntBASIC8.03□□□□□ -1.12
MSX1P28360 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC8.03□□□□□ -1.12
MSX1P28360 USP12PX-201ENST00000432383 1057 ntBASIC8.03□□□□□ -1.12
MSX1P28360 B3GNT2P1-201ENST00000434960 952 ntBASIC8.03□□□□□ -1.12
MSX1P28360 WBP1LP7-201ENST00000437905 363 ntBASIC8.03□□□□□ -1.12
MSX1P28360 GTF3AP5-201ENST00000442645 697 ntBASIC8.03□□□□□ -1.12
MSX1P28360 RAB11AP1-201ENST00000442978 646 ntBASIC8.03□□□□□ -1.12
MSX1P28360 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC8.03□□□□□ -1.12
MSX1P28360 PRELID1P3-201ENST00000450055 643 ntBASIC8.03□□□□□ -1.12
MSX1P28360 AC092687.2-201ENST00000452909 568 ntTSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 NBPF2P-201ENST00000453025 661 ntBASIC8.03□□□□□ -1.12
MSX1P28360 AC018980.1-201ENST00000457848 862 ntTSL 3 BASIC8.03□□□□□ -1.12
MSX1P28360 UBDP1-202ENST00000457888 382 ntBASIC8.03□□□□□ -1.12
MSX1P28360 CASQ1-202ENST00000467691 595 ntTSL 3 BASIC8.03□□□□□ -1.12
MSX1P28360 AC004924.1-201ENST00000480160 781 ntBASIC8.03□□□□□ -1.12
MSX1P28360 RN7SL156P-201ENST00000480334 304 ntBASIC8.03□□□□□ -1.12
MSX1P28360 RN7SL280P-201ENST00000496490 288 ntBASIC8.03□□□□□ -1.12
MSX1P28360 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 OR10J2P-201ENST00000514684 961 ntBASIC8.03□□□□□ -1.12
MSX1P28360 AC025881.1-201ENST00000518851 512 ntBASIC8.03□□□□□ -1.12
MSX1P28360 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC8.03□□□□□ -1.12
MSX1P28360 AC089998.3-201ENST00000549715 493 ntBASIC8.03□□□□□ -1.12
MSX1P28360 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 TRIM69-210ENST00000561043 1017 ntTSL 3 BASIC8.03□□□□□ -1.12
MSX1P28360 AC137800.1-202ENST00000562098 446 ntBASIC8.03□□□□□ -1.12
MSX1P28360 TPRKBP2-201ENST00000565969 475 ntBASIC8.03□□□□□ -1.12
MSX1P28360 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 EIF4A3P1-201ENST00000578499 647 ntBASIC8.03□□□□□ -1.12
MSX1P28360 ZNF793-AS1-205ENST00000589025 560 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 AC003098.1-201ENST00000591540 494 ntTSL 3 BASIC8.03□□□□□ -1.12
MSX1P28360 NUTM2B-AS1-209ENST00000596088 366 ntTSL 3 BASIC8.03□□□□□ -1.12
MSX1P28360 ZNF208-202ENST00000597040 781 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 C8orf59P2-201ENST00000603441 271 ntBASIC8.03□□□□□ -1.12
MSX1P28360 AL139418.1-201ENST00000613613 177 ntBASIC8.03□□□□□ -1.12
MSX1P28360 AL359697.1-201ENST00000624879 587 ntBASIC8.03□□□□□ -1.12
MSX1P28360 CELF2-212ENST00000632728 3827 ntAPPRIS P3 TSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 C2orf83-204ENST00000641422 291 ntAPPRIS ALT2 BASIC8.03□□□□□ -1.12
MSX1P28360 SORBS1-201ENST00000277982 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 PIWIL3-205ENST00000616349 3111 ntAPPRIS P2 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 AL022323.2-201ENST00000623239 3000 ntBASIC8.03□□□□□ -1.12
MSX1P28360 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 DCLRE1C-207ENST00000378255 2807 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 LINC02072-201ENST00000441895 2645 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 LIPA-203ENST00000371837 2513 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 GJB2-201ENST00000382844 2309 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
MSX1P28360 TMEM161B-205ENST00000506536 2328 ntTSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 MCM8-204ENST00000378896 3769 ntAPPRIS P4 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 ST5-237ENST00000530991 3396 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 PWAR5-201ENST00000624480 3180 ntBASIC8.03□□□□□ -1.12
MSX1P28360 AL445231.1-201ENST00000445523 1814 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 HSPD1P4-201ENST00000547203 1702 ntBASIC8.03□□□□□ -1.12
MSX1P28360 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 C6orf89-202ENST00000359359 2565 ntTSL 5 BASIC8.03□□□□□ -1.12
MSX1P28360 CALCOCO2-215ENST00000509507 1512 ntTSL 2 BASIC8.03□□□□□ -1.12
MSX1P28360 MCTP1-205ENST00000505208 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSX1P28360 TULP3-201ENST00000397132 1951 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.12
MSX1P28360 METTL15-204ENST00000407364 4242 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.12
MSX1P28360 DCLRE1C-204ENST00000378246 2637 ntTSL 1 (best) BASIC8.02□□□□□ -1.12
MSX1P28360 SLAMF7-211ENST00000621377 2608 ntTSL 2 BASIC8.02□□□□□ -1.12
MSX1P28360 PHLPP2-206ENST00000568954 8317 ntAPPRIS P2 TSL 1 (best) BASIC8.02□□□□□ -1.12
MSX1P28360 NOTCH2-207ENST00000602566 5046 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 UBXN8-201ENST00000265616 1450 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 SIRT5-201ENST00000359782 3797 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 ZNF726-206ENST00000594466 2473 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 NOX4-210ENST00000527956 2379 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 GALR1-201ENST00000299727 10044 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 OR2D3-201ENST00000317834 1070 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
MSX1P28360 RNU4-21P-201ENST00000362802 126 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AL450313.1-201ENST00000366376 452 ntTSL 3 BASIC8.02□□□□□ -1.13
MSX1P28360 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC8.02□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms