Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 EEF1A1P26-201ENST00000458319 1363 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AL080312.1-201ENST00000256654 824 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AL078621.1-201ENST00000272567 768 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 GZMA-201ENST00000274306 894 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 RGS8-203ENST00000367557 859 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 TRAV8-3-201ENST00000390435 341 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 CASP8-208ENST00000392266 1283 ntTSL 2 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 RPL24P7-201ENST00000399435 453 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 CNN3P1-201ENST00000401596 935 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AL513164.1-201ENST00000423268 311 ntTSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 LINC01811-202ENST00000424786 787 ntTSL 5 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 PRPS1P2-201ENST00000430496 937 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC092167.1-201ENST00000435466 495 ntTSL 4 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC138207.1-201ENST00000442757 545 ntTSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 ATP5G1P6-201ENST00000451206 412 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC092687.2-201ENST00000452909 568 ntTSL 5 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 KIF3AP1-201ENST00000454055 611 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 RN7SL314P-201ENST00000490735 292 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 RN7SL869P-201ENST00000497032 300 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC008629.1-201ENST00000506486 812 ntTSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 IGKV2-29-201ENST00000521304 372 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC138123.2-204ENST00000547432 721 ntTSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 TIMM9-205ENST00000555404 430 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC114546.2-201ENST00000560683 477 ntTSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 RBM22P13-201ENST00000569805 1244 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC007136.1-201ENST00000589141 199 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AL049840.6-202ENST00000603373 279 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC104117.5-201ENST00000606195 547 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 BX255923.1-201ENST00000613309 681 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AL157392.3-206ENST00000614899 822 ntTSL 5 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC244669.1-201ENST00000616141 715 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 MIR6723-201ENST00000621981 89 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 AL132796.3-201ENST00000624703 900 ntBASIC6.37□□□□□ -1.39
NKX3-1Q99801 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 NT5C2-203ENST00000404739 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 ZNF20-201ENST00000334213 3061 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC016251.2-201ENST00000623393 3089 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AL049844.3-201ENST00000454207 1496 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC007993.1-201ENST00000621298 2430 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 TMEM116-201ENST00000355445 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 SPATA19-201ENST00000299140 861 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 U3.1-201ENST00000362500 215 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 AMELY-202ENST00000383036 621 ntTSL 5 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AL109918.1-202ENST00000406724 436 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 RN7SKP225-201ENST00000410405 352 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 RN7SKP89-201ENST00000410774 242 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 AL691515.2-201ENST00000414765 466 ntTSL 3 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 ANKRD7-202ENST00000417525 1242 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AL590714.1-201ENST00000420498 379 ntTSL 3 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC009500.1-201ENST00000420684 583 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC009495.3-201ENST00000425688 779 ntTSL 3 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC092162.2-203ENST00000430460 579 ntTSL 4 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 DEFA11P-201ENST00000446470 261 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 RN7SL635P-201ENST00000492123 296 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 AP004833.1-201ENST00000507987 1238 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 AF186996.3-201ENST00000509527 964 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC083973.1-201ENST00000523459 590 ntTSL 2 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 C11orf70-205ENST00000534360 520 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 MELK-208ENST00000536987 2125 ntTSL 2 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 MIR4793-201ENST00000577502 87 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 RN7SL366P-201ENST00000577957 292 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 MIR4258-201ENST00000580920 91 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC090415.1-201ENST00000581877 847 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC098590.2-201ENST00000614787 281 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC006449.1-201ENST00000616263 571 ntTSL 4 BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AC022743.1-201ENST00000624990 664 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 RPL36AP21-202ENST00000639134 430 ntBASIC6.36□□□□□ -1.39
NKX3-1Q99801 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
NKX3-1Q99801 FHL5-203ENST00000541107 1904 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms