Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Gm12922-201ENSMUST00000120626 809 ntBASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Gm27801-201ENSMUST00000184174 223 ntBASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 CT030146.1-201ENSMUST00000220919 217 ntBASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 AC165080.2-201ENSMUST00000217491 1530 ntBASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RTRAFQ9CQE8 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 AC093043.1-201ENSMUST00000226700 898 ntBASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Gm8309-201ENSMUST00000206627 1448 ntBASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RTRAFQ9CQE8 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Gm37166-201ENSMUST00000195473 2474 ntBASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Gm42918-201ENSMUST00000199249 1580 ntBASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RTRAFQ9CQE8 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Gm16401-202ENSMUST00000197463 2074 ntBASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RTRAFQ9CQE8 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RTRAFQ9CQE8 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms