Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Mir770-201ENSMUST00000103252 94 ntBASIC16.66■□□□□ 0.26
Cacna1bO55017 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Cacna1bO55017 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC16.66■□□□□ 0.26
Cacna1bO55017 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Cacna1bO55017 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cacna1bO55017 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.65■□□□□ 0.26
Cacna1bO55017 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.65■□□□□ 0.26
Cacna1bO55017 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC16.65■□□□□ 0.26
Cacna1bO55017 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Cacna1bO55017 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cacna1bO55017 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Cacna1bO55017 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Cacna1bO55017 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Cacna1bO55017 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cacna1bO55017 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC16.64■□□□□ 0.25
Cacna1bO55017 Gm9449-201ENSMUST00000207265 1011 ntBASIC16.64■□□□□ 0.25
Cacna1bO55017 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cacna1bO55017 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cacna1bO55017 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cacna1bO55017 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Cacna1bO55017 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Cacna1bO55017 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cacna1bO55017 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cacna1bO55017 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC16.64■□□□□ 0.25
Cacna1bO55017 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cacna1bO55017 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC16.64■□□□□ 0.25
Cacna1bO55017 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Cacna1bO55017 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC16.64■□□□□ 0.25
Cacna1bO55017 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cacna1bO55017 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC16.63■□□□□ 0.25
Cacna1bO55017 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cacna1bO55017 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Cacna1bO55017 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
Cacna1bO55017 AC124569.2-201ENSMUST00000225998 818 ntBASIC16.63■□□□□ 0.25
Cacna1bO55017 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cacna1bO55017 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cacna1bO55017 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cacna1bO55017 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cacna1bO55017 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cacna1bO55017 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC16.63■□□□□ 0.25
Cacna1bO55017 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cacna1bO55017 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Cacna1bO55017 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Cacna1bO55017 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC16.62■□□□□ 0.25
Cacna1bO55017 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Cacna1bO55017 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC16.62■□□□□ 0.25
Cacna1bO55017 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cacna1bO55017 Gm7856-201ENSMUST00000117514 1493 ntBASIC16.61■□□□□ 0.25
Cacna1bO55017 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cacna1bO55017 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cacna1bO55017 Rps4l-201ENSMUST00000071745 943 ntBASIC16.61■□□□□ 0.25
Cacna1bO55017 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cacna1bO55017 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC16.61■□□□□ 0.25
Cacna1bO55017 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Cacna1bO55017 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
Cacna1bO55017 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cacna1bO55017 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cacna1bO55017 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cacna1bO55017 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cacna1bO55017 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cacna1bO55017 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
Cacna1bO55017 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cacna1bO55017 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms