Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL157400.2-201ENST00000454174 563 ntTSL 2 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 RN7SL36P-201ENST00000469345 276 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC123768.2-201ENST00000500941 732 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC139272.1-201ENST00000505516 640 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 NMNAT1P4-201ENST00000505598 840 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 CKMT2-AS1-206ENST00000511495 585 ntTSL 4 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC105345.2-201ENST00000515186 664 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 RN7SKP105-201ENST00000517192 314 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 DCSTAMP-203ENST00000517991 949 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC087280.1-201ENST00000530632 1003 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 AP004833.3-201ENST00000531893 322 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 KNTC1-206ENST00000534995 1065 ntTSL 2 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AP003721.2-201ENST00000536495 452 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 LINC02385-201ENST00000547554 428 ntTSL 5 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 OR11J5P-201ENST00000556889 934 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC073657.1-202ENST00000562063 334 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 IGHV1OR15-3-201ENST00000564926 351 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC093283.1-201ENST00000565306 1075 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 AP005210.1-201ENST00000583659 544 ntTSL 2 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 LAMTOR5-AS1-205ENST00000587691 441 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AL590560.2-201ENST00000608430 732 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC004839.1-201ENST00000610269 501 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC026333.4-201ENST00000613543 544 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AL355480.4-201ENST00000626823 69 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 OR9K2-204ENST00000641374 1122 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 UGT2B25P-201ENST00000511504 1586 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
NKX3-1Q99801 AC011379.1-201ENST00000508713 3025 ntBASIC6.47□□□□□ -1.37
NKX3-1Q99801 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC6.47□□□□□ -1.37
NKX3-1Q99801 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC6.46□□□□□ -1.37
NKX3-1Q99801 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.37
NKX3-1Q99801 AC241584.2-201ENST00000637142 2090 ntBASIC6.46□□□□□ -1.37
NKX3-1Q99801 OSGEPL1-204ENST00000519810 2216 ntTSL 2 BASIC6.46□□□□□ -1.37
NKX3-1Q99801 UBN1-208ENST00000590769 3530 ntTSL 2 BASIC6.46□□□□□ -1.37
NKX3-1Q99801 CTAGE11P-201ENST00000451540 2353 ntBASIC6.46□□□□□ -1.37
NKX3-1Q99801 EEF1A1P5-201ENST00000436459 1389 ntBASIC6.46□□□□□ -1.37
NKX3-1Q99801 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.46□□□□□ -1.37
NKX3-1Q99801 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
NKX3-1Q99801 ZNF655-222ENST00000493277 1815 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.37
NKX3-1Q99801 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 IFNA7-201ENST00000239347 737 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 KCNIP2-202ENST00000343195 663 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 PDHA1-202ENST00000379804 709 ntTSL 2 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 MIR575-201ENST00000385013 94 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 MIR498-201ENST00000385134 124 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 ALKBH8-202ENST00000389568 2491 ntAPPRIS P3 TSL 5 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 IGKV6D-41-201ENST00000390271 371 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 SEC61G-202ENST00000395535 459 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC133644.1-201ENST00000398171 937 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 GNAI2P2-201ENST00000417003 916 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AL354794.2-201ENST00000424795 1248 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 AL357632.1-201ENST00000426688 643 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 BTG3P1-201ENST00000435859 716 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 TULP3P1-201ENST00000442322 816 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC087385.2-201ENST00000477729 498 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 RPSAP52-201ENST00000489520 1144 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 LEMD1-208ENST00000495594 637 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 LINC01096-201ENST00000501050 1263 ntTSL 2 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 GAPDHP61-201ENST00000507324 1005 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 CENPK-208ENST00000508421 1586 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 DKK2-204ENST00000513208 925 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 OSTCP1-202ENST00000522287 1195 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 GZMB-205ENST00000526004 819 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 FXYD5-207ENST00000541435 898 ntAPPRIS P2 TSL 2 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC053513.1-201ENST00000543604 738 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 NPIPP1-203ENST00000547107 1071 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 LINC02407-202ENST00000553247 1083 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 DNM1P47-201ENST00000560757 334 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC009090.1-201ENST00000562409 358 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC136944.5-201ENST00000573021 151 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 MIR3689F-201ENST00000579617 66 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC008770.1-209ENST00000591898 356 ntTSL 3 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC012370.2-202ENST00000600508 1099 ntTSL 5 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AL139317.4-201ENST00000605879 760 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC006547.1-211ENST00000609191 828 ntTSL 5 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC129908.1-201ENST00000624553 648 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 CTSLP2-202ENST00000626319 1104 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 AC087885.1-201ENST00000641910 848 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 GNRH1-201ENST00000276414 1760 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms