Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Gm6420-201ENSMUST00000193885 723 ntBASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col28a1Q2UY11 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col28a1Q2UY11 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col28a1Q2UY11 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Gm13168-201ENSMUST00000121771 632 ntBASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Gm20049-201ENSMUST00000219950 730 ntBASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col28a1Q2UY11 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Col28a1Q2UY11 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms