Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC14.31□□□□□ -0.12
Sdc1P18828 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC14.31□□□□□ -0.12
Sdc1P18828 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Sdc1P18828 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC14.31□□□□□ -0.12
Sdc1P18828 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Zkscan3-208ENSMUST00000224820 5398 ntBASIC14.31□□□□□ -0.12
Sdc1P18828 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sdc1P18828 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Sdc1P18828 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC14.3□□□□□ -0.12
Sdc1P18828 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Sdc1P18828 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC14.3□□□□□ -0.12
Sdc1P18828 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Sdc1P18828 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Sdc1P18828 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sdc1P18828 Gm8839-201ENSMUST00000121279 1645 ntBASIC14.3□□□□□ -0.12
Sdc1P18828 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC14.29□□□□□ -0.12
Sdc1P18828 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC14.29□□□□□ -0.12
Sdc1P18828 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC14.29□□□□□ -0.12
Sdc1P18828 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC14.29□□□□□ -0.12
Sdc1P18828 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Sdc1P18828 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Sdc1P18828 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Sdc1P18828 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Sdc1P18828 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sdc1P18828 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC14.28□□□□□ -0.12
Sdc1P18828 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Sdc1P18828 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Sdc1P18828 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Sdc1P18828 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sdc1P18828 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Sdc1P18828 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC14.27□□□□□ -0.12
Sdc1P18828 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sdc1P18828 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Sdc1P18828 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sdc1P18828 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sdc1P18828 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Sdc1P18828 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sdc1P18828 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC14.27□□□□□ -0.12
Sdc1P18828 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sdc1P18828 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sdc1P18828 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Sdc1P18828 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Sdc1P18828 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sdc1P18828 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC14.27□□□□□ -0.13
Sdc1P18828 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC14.27□□□□□ -0.13
Sdc1P18828 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sdc1P18828 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Sdc1P18828 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sdc1P18828 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Sdc1P18828 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Sdc1P18828 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sdc1P18828 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms