Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps53Q8CCB4 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps53Q8CCB4 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Vps53Q8CCB4 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps53Q8CCB4 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps53Q8CCB4 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps53Q8CCB4 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Vps53Q8CCB4 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Mir5122-201ENSMUST00000175004 89 ntBASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps53Q8CCB4 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Vps53Q8CCB4 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Vps53Q8CCB4 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Gm11927-201ENSMUST00000118472 759 ntBASIC20.32■□□□□ 0.84
Vps53Q8CCB4 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps53Q8CCB4 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC20.32■□□□□ 0.84
Vps53Q8CCB4 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps53Q8CCB4 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Alkbh1-212ENSMUST00000185301 408 ntBASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Vps53Q8CCB4 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms