Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Col2a1P28481 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Col2a1P28481 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC19.89■□□□□ 0.77
Col2a1P28481 Gm17808-201ENSMUST00000200859 894 ntBASIC19.89■□□□□ 0.77
Col2a1P28481 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col2a1P28481 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col2a1P28481 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col2a1P28481 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col2a1P28481 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col2a1P28481 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col2a1P28481 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col2a1P28481 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Col2a1P28481 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col2a1P28481 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Col2a1P28481 Gm7284-201ENSMUST00000131667 944 ntBASIC19.88■□□□□ 0.77
Col2a1P28481 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC19.88■□□□□ 0.77
Col2a1P28481 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC19.88■□□□□ 0.77
Col2a1P28481 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
Col2a1P28481 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col2a1P28481 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Col2a1P28481 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col2a1P28481 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col2a1P28481 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC19.88■□□□□ 0.77
Col2a1P28481 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col2a1P28481 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col2a1P28481 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
Col2a1P28481 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col2a1P28481 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Gm11950-201ENSMUST00000121615 838 ntBASIC19.86■□□□□ 0.77
Col2a1P28481 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC19.86■□□□□ 0.77
Col2a1P28481 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Col2a1P28481 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Col2a1P28481 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Col2a1P28481 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col2a1P28481 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
Col2a1P28481 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.85■□□□□ 0.77
Col2a1P28481 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Col2a1P28481 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Ank2-226ENSMUST00000189368 339 ntBASIC19.85■□□□□ 0.77
Col2a1P28481 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.85■□□□□ 0.77
Col2a1P28481 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col2a1P28481 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Col2a1P28481 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col2a1P28481 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col2a1P28481 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.84■□□□□ 0.77
Col2a1P28481 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC19.84■□□□□ 0.77
Col2a1P28481 Gm14859-201ENSMUST00000117752 357 ntBASIC19.84■□□□□ 0.77
Col2a1P28481 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC19.84■□□□□ 0.77
Col2a1P28481 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col2a1P28481 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC19.84■□□□□ 0.77
Col2a1P28481 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col2a1P28481 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.84■□□□□ 0.77
Col2a1P28481 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col2a1P28481 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col2a1P28481 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col2a1P28481 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col2a1P28481 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
Col2a1P28481 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col2a1P28481 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col2a1P28481 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col2a1P28481 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col2a1P28481 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col2a1P28481 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col2a1P28481 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms