Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Sdc1P18828 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Sdc1P18828 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC14.43□□□□□ -0.1
Sdc1P18828 Gm19094-201ENSMUST00000209791 1246 ntBASIC14.43□□□□□ -0.1
Sdc1P18828 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC14.43□□□□□ -0.1
Sdc1P18828 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Sdc1P18828 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC14.43□□□□□ -0.1
Sdc1P18828 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sdc1P18828 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC14.43□□□□□ -0.1
Sdc1P18828 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Sdc1P18828 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Sdc1P18828 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC14.42□□□□□ -0.1
Sdc1P18828 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
Sdc1P18828 Gm10167-201ENSMUST00000150411 1479 ntBASIC14.42□□□□□ -0.1
Sdc1P18828 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC14.42□□□□□ -0.1
Sdc1P18828 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sdc1P18828 Gm8309-201ENSMUST00000206627 1448 ntBASIC14.41□□□□□ -0.1
Sdc1P18828 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Sdc1P18828 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC14.41□□□□□ -0.1
Sdc1P18828 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC14.41□□□□□ -0.1
Sdc1P18828 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Gm27032-201ENSMUST00000183124 1116 ntBASIC14.41□□□□□ -0.1
Sdc1P18828 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC14.41□□□□□ -0.1
Sdc1P18828 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Sdc1P18828 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Sdc1P18828 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Gm44544-201ENSMUST00000207052 1844 ntBASIC14.41□□□□□ -0.1
Sdc1P18828 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Sdc1P18828 Gm37563-201ENSMUST00000192580 1513 ntBASIC14.41□□□□□ -0.1
Sdc1P18828 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sdc1P18828 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Sdc1P18828 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Sdc1P18828 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Sdc1P18828 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC14.4□□□□□ -0.1
Sdc1P18828 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
Sdc1P18828 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Sdc1P18828 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Sdc1P18828 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sdc1P18828 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC14.4□□□□□ -0.1
Sdc1P18828 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms