Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.14■□□□□ 0.33
SDCBPO00560 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC17.14■□□□□ 0.33
SDCBPO00560 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.14■□□□□ 0.33
SDCBPO00560 KRT18P14-201ENST00000534205 1250 ntBASIC17.14■□□□□ 0.33
SDCBPO00560 CCDC92B-201ENST00000575506 885 ntBASIC17.14■□□□□ 0.33
SDCBPO00560 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 AC104187.1-201ENST00000607510 612 ntBASIC17.14■□□□□ 0.33
SDCBPO00560 RAB43-208ENST00000615093 783 ntTSL 5 BASIC17.14■□□□□ 0.33
SDCBPO00560 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.14■□□□□ 0.33
SDCBPO00560 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SDCBPO00560 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.13■□□□□ 0.33
SDCBPO00560 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SDCBPO00560 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SDCBPO00560 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SDCBPO00560 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SDCBPO00560 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.13■□□□□ 0.33
SDCBPO00560 COX20-201ENST00000366528 568 ntTSL 2 BASIC17.13■□□□□ 0.33
SDCBPO00560 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.13■□□□□ 0.33
SDCBPO00560 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SDCBPO00560 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC17.13■□□□□ 0.33
SDCBPO00560 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.13■□□□□ 0.33
SDCBPO00560 AC010141.2-201ENST00000452426 721 ntBASIC17.13■□□□□ 0.33
SDCBPO00560 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC17.13■□□□□ 0.33
SDCBPO00560 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC17.13■□□□□ 0.33
SDCBPO00560 TESC-206ENST00000541210 936 ntTSL 3 BASIC17.13■□□□□ 0.33
SDCBPO00560 DUX4L2-201ENST00000561772 1275 ntBASIC17.13■□□□□ 0.33
SDCBPO00560 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.13■□□□□ 0.33
SDCBPO00560 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.13■□□□□ 0.33
SDCBPO00560 DUX4L6-201ENST00000626483 1275 ntBASIC17.13■□□□□ 0.33
SDCBPO00560 DUX4L1-201ENST00000627662 1275 ntBASIC17.13■□□□□ 0.33
SDCBPO00560 DUX4L8-201ENST00000629013 1275 ntBASIC17.13■□□□□ 0.33
SDCBPO00560 DUX4L3-201ENST00000630187 1275 ntBASIC17.13■□□□□ 0.33
SDCBPO00560 DUX4L7-201ENST00000630678 1275 ntBASIC17.13■□□□□ 0.33
SDCBPO00560 DUX4L5-201ENST00000630834 1275 ntBASIC17.13■□□□□ 0.33
SDCBPO00560 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SDCBPO00560 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDCBPO00560 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.13■□□□□ 0.33
SDCBPO00560 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
SDCBPO00560 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.12■□□□□ 0.33
SDCBPO00560 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.12■□□□□ 0.33
SDCBPO00560 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.12■□□□□ 0.33
SDCBPO00560 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC17.12■□□□□ 0.33
SDCBPO00560 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.12■□□□□ 0.33
SDCBPO00560 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.12■□□□□ 0.33
SDCBPO00560 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SDCBPO00560 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
SDCBPO00560 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SDCBPO00560 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.12■□□□□ 0.33
SDCBPO00560 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDCBPO00560 AL020996.1-203ENST00000536896 2307 ntBASIC17.12■□□□□ 0.33
SDCBPO00560 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SDCBPO00560 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SDCBPO00560 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SDCBPO00560 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC17.11■□□□□ 0.33
SDCBPO00560 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.11■□□□□ 0.33
SDCBPO00560 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC17.11■□□□□ 0.33
SDCBPO00560 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms