Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sh3rf1Q69ZI1 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Gm8309-201ENSMUST00000206627 1448 ntBASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
Sh3rf1Q69ZI1 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sh3rf1Q69ZI1 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Gm12896-201ENSMUST00000118430 226 ntBASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Gm8969-201ENSMUST00000199694 526 ntBASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Sh3rf1Q69ZI1 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Sh3rf1Q69ZI1 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Gm45412-201ENSMUST00000210217 2275 ntBASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Sh3rf1Q69ZI1 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms