Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim40Q3UWA4 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Gm14281-201ENSMUST00000121700 1294 ntBASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Gm43017-201ENSMUST00000198296 752 ntBASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim40Q3UWA4 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.52■□□□□ 0.24
Trim40Q3UWA4 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim40Q3UWA4 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
Trim40Q3UWA4 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim40Q3UWA4 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim40Q3UWA4 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim40Q3UWA4 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim40Q3UWA4 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim40Q3UWA4 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim40Q3UWA4 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim40Q3UWA4 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim40Q3UWA4 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim40Q3UWA4 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim40Q3UWA4 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Cdc34b-202ENSMUST00000188741 1252 ntBASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim40Q3UWA4 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Gm43060-201ENSMUST00000200621 289 ntBASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Gm37563-201ENSMUST00000192580 1513 ntBASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim40Q3UWA4 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim40Q3UWA4 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim40Q3UWA4 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms