Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Mir1199-201ENSMUST00000117015 119 ntBASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Gm15375-201ENSMUST00000119510 849 ntBASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.59■□□□□ 0.73
Smarca1Q6PGB8 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Smarca1Q6PGB8 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Smarca1Q6PGB8 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Smarca1Q6PGB8 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Smarca1Q6PGB8 Mir6349-201ENSMUST00000184059 97 ntBASIC19.58■□□□□ 0.72
Smarca1Q6PGB8 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
Smarca1Q6PGB8 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Smarca1Q6PGB8 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smarca1Q6PGB8 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smarca1Q6PGB8 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.55■□□□□ 0.72
Smarca1Q6PGB8 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.54■□□□□ 0.72
Smarca1Q6PGB8 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Smarca1Q6PGB8 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms