Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf180Q3U827 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf180Q3U827 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC20.92■□□□□ 0.94
Rnf180Q3U827 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
Rnf180Q3U827 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf180Q3U827 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf180Q3U827 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf180Q3U827 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf180Q3U827 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Rnf180Q3U827 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf180Q3U827 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Rnf180Q3U827 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf180Q3U827 Gm4995-201ENSMUST00000117247 432 ntBASIC20.91■□□□□ 0.94
Rnf180Q3U827 AC151286.1-201ENSMUST00000198489 145 ntBASIC20.91■□□□□ 0.94
Rnf180Q3U827 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf180Q3U827 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.91■□□□□ 0.94
Rnf180Q3U827 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf180Q3U827 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf180Q3U827 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf180Q3U827 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC20.9■□□□□ 0.94
Rnf180Q3U827 AC160338.1-201ENSMUST00000214232 705 ntBASIC20.9■□□□□ 0.94
Rnf180Q3U827 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf180Q3U827 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Rnf180Q3U827 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Rnf180Q3U827 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Rnf180Q3U827 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 Gm13830-205ENSMUST00000201195 1155 ntBASIC20.89■□□□□ 0.93
Rnf180Q3U827 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Rnf180Q3U827 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.89■□□□□ 0.93
Rnf180Q3U827 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf180Q3U827 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf180Q3U827 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Rnf180Q3U827 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf180Q3U827 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf180Q3U827 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf180Q3U827 Cmtm5-203ENSMUST00000227441 610 ntBASIC20.88■□□□□ 0.93
Rnf180Q3U827 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf180Q3U827 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.88■□□□□ 0.93
Rnf180Q3U827 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf180Q3U827 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf180Q3U827 Gm32996-201ENSMUST00000199828 1447 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44357-201ENSMUST00000195897 142 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm19658-201ENSMUST00000196231 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44367-201ENSMUST00000196836 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44350-201ENSMUST00000197197 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44390-201ENSMUST00000197533 144 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44313-201ENSMUST00000198018 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44486-201ENSMUST00000198508 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44454-201ENSMUST00000198541 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44314-201ENSMUST00000199263 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44394-201ENSMUST00000199558 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44484-201ENSMUST00000199873 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44466-201ENSMUST00000200264 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm44359-201ENSMUST00000200671 138 ntBASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC20.87■□□□□ 0.93
Rnf180Q3U827 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf180Q3U827 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf180Q3U827 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf180Q3U827 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf180Q3U827 Gm13127-201ENSMUST00000118978 1389 ntBASIC20.86■□□□□ 0.93
Rnf180Q3U827 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC20.86■□□□□ 0.93
Rnf180Q3U827 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Rnf180Q3U827 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf180Q3U827 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf180Q3U827 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf180Q3U827 AC125350.1-201ENSMUST00000225115 903 ntBASIC20.86■□□□□ 0.93
Rnf180Q3U827 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf180Q3U827 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf180Q3U827 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf180Q3U827 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rnf180Q3U827 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Rnf180Q3U827 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Rnf180Q3U827 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms