Protein–RNA interactions for Protein: A2AN08

Ubr4, E3 ubiquitin-protein ligase UBR4, mousemouse

Predictions only

Length 5,180 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4A2AN08 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Ubr4A2AN08 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC9.39□□□□□ -0.91
Ubr4A2AN08 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Il17rd-202ENSMUST00000223942 2186 ntBASIC9.39□□□□□ -0.91
Ubr4A2AN08 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Gm6007-201ENSMUST00000208170 823 ntBASIC9.39□□□□□ -0.91
Ubr4A2AN08 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Ubr4A2AN08 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 AC108846.1-201ENSMUST00000214531 513 ntBASIC9.38□□□□□ -0.91
Ubr4A2AN08 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Gm15043-201ENSMUST00000118843 1543 ntBASIC9.38□□□□□ -0.91
Ubr4A2AN08 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Snhg20-203ENSMUST00000182811 2153 ntBASIC9.38□□□□□ -0.91
Ubr4A2AN08 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Gm14140-201ENSMUST00000119999 995 ntBASIC9.38□□□□□ -0.91
Ubr4A2AN08 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC9.38□□□□□ -0.91
Ubr4A2AN08 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC9.38□□□□□ -0.91
Ubr4A2AN08 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Gm25857-201ENSMUST00000082788 129 ntBASIC9.37□□□□□ -0.91
Ubr4A2AN08 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Ubr4A2AN08 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
Ubr4A2AN08 Cdk7-205ENSMUST00000225990 1159 ntBASIC9.36□□□□□ -0.91
Ubr4A2AN08 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Ubr4A2AN08 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Ubr4A2AN08 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Ubr4A2AN08 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Ubr4A2AN08 Gm12260-201ENSMUST00000122447 411 ntBASIC9.36□□□□□ -0.91
Ubr4A2AN08 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Ubr4A2AN08 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms