Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Trbv1A0A0B4J1G7 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Trbv1A0A0B4J1G7 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
Trbv1A0A0B4J1G7 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 CT030146.1-201ENSMUST00000220919 217 ntBASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm45774-201ENSMUST00000211992 2665 ntBASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC13.95□□□□□ -0.18
Trbv1A0A0B4J1G7 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm7860-201ENSMUST00000121190 879 ntBASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trbv1A0A0B4J1G7 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trbv1A0A0B4J1G7 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Trbv1A0A0B4J1G7 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trbv1A0A0B4J1G7 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms