Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav1A0A075B5Z4 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav1A0A075B5Z4 Gm11927-201ENSMUST00000118472 759 ntBASIC16.52■□□□□ 0.24
Trav1A0A075B5Z4 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC16.52■□□□□ 0.24
Trav1A0A075B5Z4 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav1A0A075B5Z4 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trav1A0A075B5Z4 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav1A0A075B5Z4 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav1A0A075B5Z4 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Trav1A0A075B5Z4 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Trav1A0A075B5Z4 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Gm37179-201ENSMUST00000194862 823 ntBASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC16.51■□□□□ 0.23
Trav1A0A075B5Z4 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trav1A0A075B5Z4 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav1A0A075B5Z4 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav1A0A075B5Z4 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 AC121598.2-201ENSMUST00000228376 2325 ntBASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Gm37820-201ENSMUST00000194021 2147 ntBASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav1A0A075B5Z4 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms