Protein–RNA interactions for Protein: Q9CWM4

Pfdn1, Prefoldin subunit 1, mousemouse

Predictions only

Length 122 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pfdn1Q9CWM4 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pfdn1Q9CWM4 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Pfdn1Q9CWM4 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.3■■□□□ 1
Pfdn1Q9CWM4 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.29■■□□□ 1
Pfdn1Q9CWM4 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC21.29■■□□□ 1
Pfdn1Q9CWM4 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Pfdn1Q9CWM4 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pfdn1Q9CWM4 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Pfdn1Q9CWM4 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.27■■□□□ 1
Pfdn1Q9CWM4 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Pfdn1Q9CWM4 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pfdn1Q9CWM4 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pfdn1Q9CWM4 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Pfdn1Q9CWM4 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
Pfdn1Q9CWM4 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pfdn1Q9CWM4 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Pfdn1Q9CWM4 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pfdn1Q9CWM4 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pfdn1Q9CWM4 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pfdn1Q9CWM4 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Pfdn1Q9CWM4 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Pfdn1Q9CWM4 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Pfdn1Q9CWM4 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pfdn1Q9CWM4 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pfdn1Q9CWM4 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pfdn1Q9CWM4 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pfdn1Q9CWM4 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Pfdn1Q9CWM4 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Pfdn1Q9CWM4 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Pfdn1Q9CWM4 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pfdn1Q9CWM4 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pfdn1Q9CWM4 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Pfdn1Q9CWM4 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Pfdn1Q9CWM4 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.18■□□□□ 0.98
Pfdn1Q9CWM4 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Pfdn1Q9CWM4 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Pfdn1Q9CWM4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pfdn1Q9CWM4 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Pfdn1Q9CWM4 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pfdn1Q9CWM4 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.16■□□□□ 0.98
Pfdn1Q9CWM4 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pfdn1Q9CWM4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.16■□□□□ 0.98
Pfdn1Q9CWM4 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pfdn1Q9CWM4 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Pfdn1Q9CWM4 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.14■□□□□ 0.97
Pfdn1Q9CWM4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Pfdn1Q9CWM4 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pfdn1Q9CWM4 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Pfdn1Q9CWM4 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pfdn1Q9CWM4 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pfdn1Q9CWM4 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pfdn1Q9CWM4 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC21.11■□□□□ 0.97
Pfdn1Q9CWM4 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Pfdn1Q9CWM4 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Pfdn1Q9CWM4 Gm6345-201ENSMUST00000180378 1691 ntBASIC21.1■□□□□ 0.97
Pfdn1Q9CWM4 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pfdn1Q9CWM4 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pfdn1Q9CWM4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Pfdn1Q9CWM4 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pfdn1Q9CWM4 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Pfdn1Q9CWM4 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
Pfdn1Q9CWM4 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Pfdn1Q9CWM4 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Pfdn1Q9CWM4 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.09■□□□□ 0.97
Pfdn1Q9CWM4 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Pfdn1Q9CWM4 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pfdn1Q9CWM4 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pfdn1Q9CWM4 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pfdn1Q9CWM4 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Pfdn1Q9CWM4 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Pfdn1Q9CWM4 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pfdn1Q9CWM4 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pfdn1Q9CWM4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Pfdn1Q9CWM4 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Pfdn1Q9CWM4 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pfdn1Q9CWM4 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pfdn1Q9CWM4 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pfdn1Q9CWM4 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pfdn1Q9CWM4 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pfdn1Q9CWM4 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pfdn1Q9CWM4 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pfdn1Q9CWM4 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pfdn1Q9CWM4 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pfdn1Q9CWM4 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Pfdn1Q9CWM4 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pfdn1Q9CWM4 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pfdn1Q9CWM4 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pfdn1Q9CWM4 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Pfdn1Q9CWM4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Pfdn1Q9CWM4 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Pfdn1Q9CWM4 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pfdn1Q9CWM4 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pfdn1Q9CWM4 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.01■□□□□ 0.95
Pfdn1Q9CWM4 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Pfdn1Q9CWM4 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pfdn1Q9CWM4 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pfdn1Q9CWM4 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pfdn1Q9CWM4 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pfdn1Q9CWM4 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Pfdn1Q9CWM4 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms