Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC30.46■■■□□ 2.47
Rnf180Q3U827 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
Rnf180Q3U827 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
Rnf180Q3U827 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
Rnf180Q3U827 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Rnf180Q3U827 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Rnf180Q3U827 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
Rnf180Q3U827 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC30.43■■■□□ 2.46
Rnf180Q3U827 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
Rnf180Q3U827 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC30.42■■■□□ 2.46
Rnf180Q3U827 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Rnf180Q3U827 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC30.41■■■□□ 2.46
Rnf180Q3U827 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Rnf180Q3U827 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC30.39■■■□□ 2.46
Rnf180Q3U827 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC30.38■■■□□ 2.45
Rnf180Q3U827 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Rnf180Q3U827 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Rnf180Q3U827 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Rnf180Q3U827 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Rnf180Q3U827 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC30.34■■■□□ 2.45
Rnf180Q3U827 Gm11687-201ENSMUST00000118911 886 ntBASIC30.34■■■□□ 2.45
Rnf180Q3U827 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC30.34■■■□□ 2.45
Rnf180Q3U827 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC30.34■■■□□ 2.45
Rnf180Q3U827 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Rnf180Q3U827 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC30.33■■■□□ 2.45
Rnf180Q3U827 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Rnf180Q3U827 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Rnf180Q3U827 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Rnf180Q3U827 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC30.32■■■□□ 2.44
Rnf180Q3U827 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Rnf180Q3U827 Scarna2-201ENSMUST00000157560 414 ntBASIC30.31■■■□□ 2.44
Rnf180Q3U827 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Rnf180Q3U827 Gm7332-201ENSMUST00000118351 454 ntBASIC30.3■■■□□ 2.44
Rnf180Q3U827 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Rnf180Q3U827 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Rnf180Q3U827 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC30.28■■■□□ 2.44
Rnf180Q3U827 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Rnf180Q3U827 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Rnf180Q3U827 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC30.27■■■□□ 2.44
Rnf180Q3U827 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
Rnf180Q3U827 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
Rnf180Q3U827 Gm5812-201ENSMUST00000061073 957 ntBASIC30.26■■■□□ 2.43
Rnf180Q3U827 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC30.26■■■□□ 2.43
Rnf180Q3U827 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Rnf180Q3U827 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Rnf180Q3U827 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC30.25■■■□□ 2.43
Rnf180Q3U827 Gm4799-201ENSMUST00000095396 657 ntBASIC30.24■■■□□ 2.43
Rnf180Q3U827 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC30.24■■■□□ 2.43
Rnf180Q3U827 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Rnf180Q3U827 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC30.23■■■□□ 2.43
Rnf180Q3U827 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Rnf180Q3U827 Gm9806-201ENSMUST00000051080 552 ntBASIC30.23■■■□□ 2.43
Rnf180Q3U827 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Rnf180Q3U827 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Rnf180Q3U827 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Rnf180Q3U827 Gm6345-201ENSMUST00000180378 1691 ntBASIC30.19■■■□□ 2.42
Rnf180Q3U827 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Rnf180Q3U827 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Rnf180Q3U827 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC30.18■■■□□ 2.42
Rnf180Q3U827 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Rnf180Q3U827 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC30.16■■■□□ 2.42
Rnf180Q3U827 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Rnf180Q3U827 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Rnf180Q3U827 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC30.13■■■□□ 2.41
Rnf180Q3U827 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC30.11■■■□□ 2.41
Rnf180Q3U827 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC30.11■■■□□ 2.41
Rnf180Q3U827 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Rnf180Q3U827 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Rnf180Q3U827 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
Rnf180Q3U827 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC30.09■■■□□ 2.41
Rnf180Q3U827 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
Rnf180Q3U827 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Rnf180Q3U827 Gm16437-201ENSMUST00000025669 507 ntBASIC30.08■■■□□ 2.41
Rnf180Q3U827 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Rnf180Q3U827 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Rnf180Q3U827 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Rnf180Q3U827 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Rnf180Q3U827 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Rnf180Q3U827 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
Rnf180Q3U827 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC30.03■■■□□ 2.4
Rnf180Q3U827 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Rnf180Q3U827 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC30.02■■■□□ 2.4
Rnf180Q3U827 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Rnf180Q3U827 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
Rnf180Q3U827 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Rnf180Q3U827 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
Rnf180Q3U827 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Rnf180Q3U827 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Rnf180Q3U827 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
Rnf180Q3U827 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Rnf180Q3U827 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC29.96■■■□□ 2.39
Rnf180Q3U827 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Rnf180Q3U827 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
Rnf180Q3U827 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
Rnf180Q3U827 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Rnf180Q3U827 Gm27502-201ENSMUST00000183495 199 ntBASIC29.94■■■□□ 2.38
Rnf180Q3U827 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
Rnf180Q3U827 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Rnf180Q3U827 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC29.93■■■□□ 2.38
Rnf180Q3U827 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms