Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdx1P18111 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cdx1P18111 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdx1P18111 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Cdx1P18111 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdx1P18111 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdx1P18111 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cdx1P18111 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC19.18■□□□□ 0.66
Cdx1P18111 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Cdx1P18111 Peli2-204ENSMUST00000226513 1320 ntBASIC19.18■□□□□ 0.66
Cdx1P18111 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC19.18■□□□□ 0.66
Cdx1P18111 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdx1P18111 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
Cdx1P18111 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdx1P18111 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.16■□□□□ 0.66
Cdx1P18111 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Cdx1P18111 Tdp2-203ENSMUST00000223804 1136 ntBASIC19.16■□□□□ 0.66
Cdx1P18111 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdx1P18111 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdx1P18111 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Cdx1P18111 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cdx1P18111 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Cdx1P18111 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cdx1P18111 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cdx1P18111 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cdx1P18111 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cdx1P18111 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdx1P18111 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Cdx1P18111 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdx1P18111 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdx1P18111 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
Cdx1P18111 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdx1P18111 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdx1P18111 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdx1P18111 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdx1P18111 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Cdx1P18111 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Cdx1P18111 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdx1P18111 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdx1P18111 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdx1P18111 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Cdx1P18111 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC19.07■□□□□ 0.64
Cdx1P18111 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdx1P18111 Mipep-204ENSMUST00000225043 1548 ntBASIC19.06■□□□□ 0.64
Cdx1P18111 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdx1P18111 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Cdx1P18111 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.06■□□□□ 0.64
Cdx1P18111 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdx1P18111 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdx1P18111 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Cdx1P18111 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.05■□□□□ 0.64
Cdx1P18111 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Cdx1P18111 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdx1P18111 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdx1P18111 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.04■□□□□ 0.64
Cdx1P18111 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Cdx1P18111 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdx1P18111 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdx1P18111 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdx1P18111 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdx1P18111 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdx1P18111 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC19.03■□□□□ 0.64
Cdx1P18111 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.03■□□□□ 0.64
Cdx1P18111 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdx1P18111 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Cdx1P18111 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Cdx1P18111 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC19.02■□□□□ 0.64
Cdx1P18111 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdx1P18111 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Cdx1P18111 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC19.02■□□□□ 0.64
Cdx1P18111 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdx1P18111 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdx1P18111 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdx1P18111 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Cdx1P18111 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Cdx1P18111 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdx1P18111 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdx1P18111 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
Cdx1P18111 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdx1P18111 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Cdx1P18111 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdx1P18111 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdx1P18111 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdx1P18111 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdx1P18111 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Cdx1P18111 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
Cdx1P18111 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cdx1P18111 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cdx1P18111 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Cdx1P18111 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cdx1P18111 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Cdx1P18111 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdx1P18111 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdx1P18111 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Cdx1P18111 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdx1P18111 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Cdx1P18111 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdx1P18111 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC18.95■□□□□ 0.62
Cdx1P18111 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Cdx1P18111 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 10.7 ms