Protein–RNA interactions for Protein: A0N8R1

Trav12-1, T cell receptor alpha variable 12-1 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav12-1A0N8R1 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trav12-1A0N8R1 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC20.32■□□□□ 0.84
Trav12-1A0N8R1 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trav12-1A0N8R1 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav12-1A0N8R1 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC20.31■□□□□ 0.84
Trav12-1A0N8R1 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav12-1A0N8R1 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trav12-1A0N8R1 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav12-1A0N8R1 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav12-1A0N8R1 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav12-1A0N8R1 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav12-1A0N8R1 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav12-1A0N8R1 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.28■□□□□ 0.84
Trav12-1A0N8R1 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav12-1A0N8R1 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trav12-1A0N8R1 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trav12-1A0N8R1 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Trav12-1A0N8R1 Gm16148-201ENSMUST00000119653 893 ntBASIC20.27■□□□□ 0.84
Trav12-1A0N8R1 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trav12-1A0N8R1 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav12-1A0N8R1 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.26■□□□□ 0.83
Trav12-1A0N8R1 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trav12-1A0N8R1 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.25■□□□□ 0.83
Trav12-1A0N8R1 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav12-1A0N8R1 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Trav12-1A0N8R1 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav12-1A0N8R1 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav12-1A0N8R1 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Trav12-1A0N8R1 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC20.24■□□□□ 0.83
Trav12-1A0N8R1 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav12-1A0N8R1 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav12-1A0N8R1 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trav12-1A0N8R1 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.21■□□□□ 0.83
Trav12-1A0N8R1 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav12-1A0N8R1 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trav12-1A0N8R1 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trav12-1A0N8R1 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.21■□□□□ 0.83
Trav12-1A0N8R1 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav12-1A0N8R1 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav12-1A0N8R1 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav12-1A0N8R1 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav12-1A0N8R1 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav12-1A0N8R1 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trav12-1A0N8R1 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav12-1A0N8R1 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Trav12-1A0N8R1 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav12-1A0N8R1 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav12-1A0N8R1 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav12-1A0N8R1 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Trav12-1A0N8R1 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Trav12-1A0N8R1 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav12-1A0N8R1 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC20.15■□□□□ 0.82
Trav12-1A0N8R1 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav12-1A0N8R1 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav12-1A0N8R1 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav12-1A0N8R1 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav12-1A0N8R1 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Trav12-1A0N8R1 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Trav12-1A0N8R1 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.14■□□□□ 0.81
Trav12-1A0N8R1 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav12-1A0N8R1 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.13■□□□□ 0.81
Trav12-1A0N8R1 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trav12-1A0N8R1 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav12-1A0N8R1 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav12-1A0N8R1 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trav12-1A0N8R1 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trav12-1A0N8R1 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
Trav12-1A0N8R1 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav12-1A0N8R1 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav12-1A0N8R1 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC20.09■□□□□ 0.81
Trav12-1A0N8R1 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav12-1A0N8R1 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Trav12-1A0N8R1 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Trav12-1A0N8R1 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.07■□□□□ 0.8
Trav12-1A0N8R1 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav12-1A0N8R1 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trav12-1A0N8R1 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav12-1A0N8R1 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav12-1A0N8R1 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Trav12-1A0N8R1 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav12-1A0N8R1 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav12-1A0N8R1 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav12-1A0N8R1 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trav12-1A0N8R1 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav12-1A0N8R1 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Trav12-1A0N8R1 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav12-1A0N8R1 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trav12-1A0N8R1 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav12-1A0N8R1 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav12-1A0N8R1 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trav12-1A0N8R1 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trav12-1A0N8R1 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Trav12-1A0N8R1 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trav12-1A0N8R1 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trav12-1A0N8R1 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.99■□□□□ 0.79
Trav12-1A0N8R1 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav12-1A0N8R1 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trav12-1A0N8R1 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
Trav12-1A0N8R1 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.98■□□□□ 0.79
Trav12-1A0N8R1 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms