Protein–RNA interactions for Protein: A0A0G2JEM0

Trav3n-3, T cell receptor alpha variable 3D-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3n-3A0A0G2JEM0 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC18.16■□□□□ 0.5
Trav3n-3A0A0G2JEM0 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Trav3n-3A0A0G2JEM0 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trav3n-3A0A0G2JEM0 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav3n-3A0A0G2JEM0 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav3n-3A0A0G2JEM0 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.12■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Gm6345-201ENSMUST00000180378 1691 ntBASIC18.09■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.09■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trav3n-3A0A0G2JEM0 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC18.02■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC18.02■□□□□ 0.48
Trav3n-3A0A0G2JEM0 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC18.01■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC18■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC17.97■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav3n-3A0A0G2JEM0 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Trav3n-3A0A0G2JEM0 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC17.93■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav3n-3A0A0G2JEM0 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC17.91■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav3n-3A0A0G2JEM0 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trav3n-3A0A0G2JEM0 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav3n-3A0A0G2JEM0 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trav3n-3A0A0G2JEM0 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trav3n-3A0A0G2JEM0 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Trav3n-3A0A0G2JEM0 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms