Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cdc40Q9DC48 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Cdc40Q9DC48 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cdc40Q9DC48 Dio3-201ENSMUST00000097228 1449 ntBASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Fam105a-203ENSMUST00000226170 3043 ntBASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Arhgef33-211ENSMUST00000225658 473 ntBASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdc40Q9DC48 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Gm5643-201ENSMUST00000117081 966 ntBASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdc40Q9DC48 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdc40Q9DC48 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdc40Q9DC48 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdc40Q9DC48 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdc40Q9DC48 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdc40Q9DC48 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdc40Q9DC48 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdc40Q9DC48 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdc40Q9DC48 Gm35558-201ENSMUST00000222675 2219 ntBASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 AC121961.1-201ENSMUST00000218594 1779 ntBASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdc40Q9DC48 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Gm11249-201ENSMUST00000117071 859 ntBASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.5■□□□□ 0.23
Cdc40Q9DC48 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cdc40Q9DC48 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdc40Q9DC48 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdc40Q9DC48 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdc40Q9DC48 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms