Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Smc1aQ9CU62 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Mir6982-201ENSMUST00000184354 68 ntBASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Smc1aQ9CU62 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Smc1aQ9CU62 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smc1aQ9CU62 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Gm2559-201ENSMUST00000201323 363 ntBASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.85■□□□□ 0.77
Smc1aQ9CU62 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Smc1aQ9CU62 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Gm22325-201ENSMUST00000158904 308 ntBASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smc1aQ9CU62 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Smc1aQ9CU62 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Smc1aQ9CU62 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Smc1aQ9CU62 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Smc1aQ9CU62 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
Smc1aQ9CU62 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Smc1aQ9CU62 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
Smc1aQ9CU62 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Smc1aQ9CU62 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smc1aQ9CU62 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smc1aQ9CU62 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smc1aQ9CU62 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms