Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ushbp1Q8R370 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ushbp1Q8R370 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ushbp1Q8R370 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ushbp1Q8R370 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ushbp1Q8R370 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.02■□□□□ 0.8
Ushbp1Q8R370 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ushbp1Q8R370 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ushbp1Q8R370 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.02■□□□□ 0.79
Ushbp1Q8R370 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ushbp1Q8R370 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.02■□□□□ 0.79
Ushbp1Q8R370 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ushbp1Q8R370 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Ushbp1Q8R370 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
Ushbp1Q8R370 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ushbp1Q8R370 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.01■□□□□ 0.79
Ushbp1Q8R370 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ushbp1Q8R370 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ushbp1Q8R370 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20■□□□□ 0.79
Ushbp1Q8R370 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Ushbp1Q8R370 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ushbp1Q8R370 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Ushbp1Q8R370 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Ushbp1Q8R370 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20■□□□□ 0.79
Ushbp1Q8R370 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20■□□□□ 0.79
Ushbp1Q8R370 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC20■□□□□ 0.79
Ushbp1Q8R370 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20■□□□□ 0.79
Ushbp1Q8R370 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Ushbp1Q8R370 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ushbp1Q8R370 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ushbp1Q8R370 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ushbp1Q8R370 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Dio3-201ENSMUST00000097228 1449 ntBASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Gm715-201ENSMUST00000117865 831 ntBASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Gm29994-201ENSMUST00000195495 1193 ntBASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ushbp1Q8R370 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms