Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 C1QBPP2-201ENST00000528754 825 ntBASIC20.86■□□□□ 0.93
USP39Q53GS9 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.86■□□□□ 0.93
USP39Q53GS9 PNMA6B-201ENST00000538162 1200 ntBASIC20.86■□□□□ 0.93
USP39Q53GS9 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.86■□□□□ 0.93
USP39Q53GS9 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.86■□□□□ 0.93
USP39Q53GS9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP39Q53GS9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP39Q53GS9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.86■□□□□ 0.93
USP39Q53GS9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
USP39Q53GS9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP39Q53GS9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP39Q53GS9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
USP39Q53GS9 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP39Q53GS9 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.85■□□□□ 0.93
USP39Q53GS9 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP39Q53GS9 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
USP39Q53GS9 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
USP39Q53GS9 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP39Q53GS9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP39Q53GS9 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP39Q53GS9 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.85■□□□□ 0.93
USP39Q53GS9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USP39Q53GS9 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP39Q53GS9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP39Q53GS9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP39Q53GS9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.85■□□□□ 0.93
USP39Q53GS9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.85■□□□□ 0.93
USP39Q53GS9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.85■□□□□ 0.93
USP39Q53GS9 AC092368.3-202ENST00000574180 1591 ntBASIC20.85■□□□□ 0.93
USP39Q53GS9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.84■□□□□ 0.93
USP39Q53GS9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP39Q53GS9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.84■□□□□ 0.93
USP39Q53GS9 KRT18P68-201ENST00000392293 1000 ntBASIC20.84■□□□□ 0.93
USP39Q53GS9 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
USP39Q53GS9 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.84■□□□□ 0.93
USP39Q53GS9 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.84■□□□□ 0.93
USP39Q53GS9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.84■□□□□ 0.93
USP39Q53GS9 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
USP39Q53GS9 AC010542.4-201ENST00000563151 1910 ntBASIC20.84■□□□□ 0.93
USP39Q53GS9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP39Q53GS9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.83■□□□□ 0.93
USP39Q53GS9 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.83■□□□□ 0.93
USP39Q53GS9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP39Q53GS9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP39Q53GS9 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.83■□□□□ 0.93
USP39Q53GS9 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.83■□□□□ 0.93
USP39Q53GS9 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.83■□□□□ 0.93
USP39Q53GS9 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.83■□□□□ 0.92
USP39Q53GS9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP39Q53GS9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
USP39Q53GS9 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
USP39Q53GS9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP39Q53GS9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP39Q53GS9 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP39Q53GS9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.82■□□□□ 0.92
USP39Q53GS9 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.82■□□□□ 0.92
USP39Q53GS9 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
USP39Q53GS9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.82■□□□□ 0.92
USP39Q53GS9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP39Q53GS9 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP39Q53GS9 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP39Q53GS9 PKD1P6-201ENST00000343738 4769 ntBASIC20.82■□□□□ 0.92
USP39Q53GS9 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP39Q53GS9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.81■□□□□ 0.92
USP39Q53GS9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.81■□□□□ 0.92
USP39Q53GS9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP39Q53GS9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP39Q53GS9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.81■□□□□ 0.92
USP39Q53GS9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.81■□□□□ 0.92
USP39Q53GS9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.81■□□□□ 0.92
USP39Q53GS9 RN7SL471P-201ENST00000580476 299 ntBASIC20.81■□□□□ 0.92
USP39Q53GS9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP39Q53GS9 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.81■□□□□ 0.92
USP39Q53GS9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP39Q53GS9 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
USP39Q53GS9 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USP39Q53GS9 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.8■□□□□ 0.92
USP39Q53GS9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.8■□□□□ 0.92
USP39Q53GS9 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP39Q53GS9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.8■□□□□ 0.92
USP39Q53GS9 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.8■□□□□ 0.92
USP39Q53GS9 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.8■□□□□ 0.92
USP39Q53GS9 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.8■□□□□ 0.92
USP39Q53GS9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms