Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
Hoxd3P09027 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC13.87□□□□□ -0.19
Hoxd3P09027 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC13.87□□□□□ -0.19
Hoxd3P09027 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Shroom3-211ENSMUST00000225438 5742 ntBASIC13.87□□□□□ -0.19
Hoxd3P09027 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Hoxd3P09027 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxd3P09027 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC13.86□□□□□ -0.19
Hoxd3P09027 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Hoxd3P09027 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC13.86□□□□□ -0.19
Hoxd3P09027 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC13.86□□□□□ -0.19
Hoxd3P09027 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC13.86□□□□□ -0.19
Hoxd3P09027 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Hoxd3P09027 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC13.86□□□□□ -0.19
Hoxd3P09027 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
Hoxd3P09027 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Hoxd3P09027 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
Hoxd3P09027 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxd3P09027 CT010444.2-201ENSMUST00000217877 1629 ntBASIC13.86□□□□□ -0.19
Hoxd3P09027 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC13.85□□□□□ -0.19
Hoxd3P09027 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
Hoxd3P09027 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Gm45560-201ENSMUST00000211492 1472 ntBASIC13.85□□□□□ -0.19
Hoxd3P09027 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Hoxd3P09027 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxd3P09027 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC13.84□□□□□ -0.19
Hoxd3P09027 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Mir6982-201ENSMUST00000184354 68 ntBASIC13.84□□□□□ -0.19
Hoxd3P09027 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC13.84□□□□□ -0.19
Hoxd3P09027 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Gm38345-201ENSMUST00000192635 1748 ntBASIC13.84□□□□□ -0.19
Hoxd3P09027 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxd3P09027 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Hoxd3P09027 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC13.83□□□□□ -0.19
Hoxd3P09027 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hoxd3P09027 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hoxd3P09027 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hoxd3P09027 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Hoxd3P09027 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC13.83□□□□□ -0.2
Hoxd3P09027 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hoxd3P09027 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hoxd3P09027 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC13.83□□□□□ -0.2
Hoxd3P09027 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hoxd3P09027 Mir1199-201ENSMUST00000117015 119 ntBASIC13.83□□□□□ -0.2
Hoxd3P09027 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC13.83□□□□□ -0.2
Hoxd3P09027 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Hoxd3P09027 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Hoxd3P09027 Mir6349-201ENSMUST00000184059 97 ntBASIC13.83□□□□□ -0.2
Hoxd3P09027 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC13.83□□□□□ -0.2
Hoxd3P09027 Gm18025-201ENSMUST00000221733 862 ntBASIC13.83□□□□□ -0.2
Hoxd3P09027 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC13.83□□□□□ -0.2
Hoxd3P09027 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hoxd3P09027 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Hoxd3P09027 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms