Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Gm12441-201ENSMUST00000121806 588 ntBASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Ddx41-204ENSMUST00000224765 2199 ntBASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim3Q9R1R2 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Gm5408-201ENSMUST00000197998 747 ntBASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Gm43859-201ENSMUST00000200075 1412 ntBASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Gm37563-201ENSMUST00000192580 1513 ntBASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim3Q9R1R2 Gm43213-201ENSMUST00000151866 1790 ntBASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Gm42939-201ENSMUST00000197514 2205 ntBASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Spcs1-207ENSMUST00000228767 1008 ntBASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim3Q9R1R2 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim3Q9R1R2 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim3Q9R1R2 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim3Q9R1R2 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Gm26524-201ENSMUST00000192339 390 ntBASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Fst-202ENSMUST00000223640 2612 ntBASIC16.83■□□□□ 0.28
Trim3Q9R1R2 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 AC123834.2-201ENSMUST00000224038 2340 ntBASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim3Q9R1R2 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Gm45906-201ENSMUST00000208911 1430 ntBASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms