Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Lig3P97386 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.49■□□□□ 0.71
Lig3P97386 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Lig3P97386 Gm7860-201ENSMUST00000121190 879 ntBASIC19.49■□□□□ 0.71
Lig3P97386 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC19.49■□□□□ 0.71
Lig3P97386 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
Lig3P97386 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.49■□□□□ 0.71
Lig3P97386 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
Lig3P97386 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC19.49■□□□□ 0.71
Lig3P97386 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.48■□□□□ 0.71
Lig3P97386 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig3P97386 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig3P97386 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Lig3P97386 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.48■□□□□ 0.71
Lig3P97386 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig3P97386 Gm11249-201ENSMUST00000117071 859 ntBASIC19.48■□□□□ 0.71
Lig3P97386 Gm15378-201ENSMUST00000121894 207 ntBASIC19.48■□□□□ 0.71
Lig3P97386 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.48■□□□□ 0.71
Lig3P97386 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Lig3P97386 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Lig3P97386 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig3P97386 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC19.48■□□□□ 0.71
Lig3P97386 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig3P97386 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.47■□□□□ 0.71
Lig3P97386 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Lig3P97386 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.47■□□□□ 0.71
Lig3P97386 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.47■□□□□ 0.71
Lig3P97386 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
Lig3P97386 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig3P97386 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.47■□□□□ 0.71
Lig3P97386 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Lig3P97386 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig3P97386 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Lig3P97386 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Lig3P97386 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.45■□□□□ 0.7
Lig3P97386 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.45■□□□□ 0.7
Lig3P97386 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Lig3P97386 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig3P97386 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig3P97386 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Lig3P97386 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.44■□□□□ 0.7
Lig3P97386 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig3P97386 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig3P97386 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Lig3P97386 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.44■□□□□ 0.7
Lig3P97386 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig3P97386 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig3P97386 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.44■□□□□ 0.7
Lig3P97386 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Lig3P97386 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Lig3P97386 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig3P97386 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig3P97386 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.43■□□□□ 0.7
Lig3P97386 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig3P97386 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms