Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cdc40Q9DC48 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Cdc40Q9DC48 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cdc40Q9DC48 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Cdc40Q9DC48 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cdc40Q9DC48 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 AC160393.1-201ENSMUST00000218378 1279 ntBASIC16.71■□□□□ 0.27
Cdc40Q9DC48 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cdc40Q9DC48 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Cdc40Q9DC48 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cdc40Q9DC48 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Gm8309-201ENSMUST00000206627 1448 ntBASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Cdc40Q9DC48 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Gm2559-201ENSMUST00000201323 363 ntBASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cdc40Q9DC48 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Gm10252-201ENSMUST00000209541 832 ntBASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cdc40Q9DC48 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Gm37805-201ENSMUST00000192612 1094 ntBASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cdc40Q9DC48 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms