Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Gm26524-201ENSMUST00000192339 390 ntBASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smc1aQ9CU62 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Smc1aQ9CU62 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Smc1aQ9CU62 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Smc1aQ9CU62 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC20.08■□□□□ 0.8
Smc1aQ9CU62 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Smc1aQ9CU62 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Gm44878-201ENSMUST00000205812 1295 ntBASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smc1aQ9CU62 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Rab3c-203ENSMUST00000224180 967 ntBASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Ddx41-204ENSMUST00000224765 2199 ntBASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Smc1aQ9CU62 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smc1aQ9CU62 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smc1aQ9CU62 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smc1aQ9CU62 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smc1aQ9CU62 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smc1aQ9CU62 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.03■□□□□ 0.8
Smc1aQ9CU62 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smc1aQ9CU62 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.03■□□□□ 0.8
Smc1aQ9CU62 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smc1aQ9CU62 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smc1aQ9CU62 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms