Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdha4O88689 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdha4O88689 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdha4O88689 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdha4O88689 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC20.1■□□□□ 0.81
Pcdha4O88689 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdha4O88689 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC20.1■□□□□ 0.81
Pcdha4O88689 Mir6349-201ENSMUST00000184059 97 ntBASIC20.1■□□□□ 0.81
Pcdha4O88689 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC20.1■□□□□ 0.81
Pcdha4O88689 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdha4O88689 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdha4O88689 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC20.1■□□□□ 0.81
Pcdha4O88689 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdha4O88689 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Pcdha4O88689 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdha4O88689 Fst-202ENSMUST00000223640 2612 ntBASIC20.09■□□□□ 0.81
Pcdha4O88689 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Pcdha4O88689 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Pcdha4O88689 Gm22240-201ENSMUST00000175225 82 ntBASIC20.09■□□□□ 0.81
Pcdha4O88689 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC20.09■□□□□ 0.81
Pcdha4O88689 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Pcdha4O88689 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.09■□□□□ 0.81
Pcdha4O88689 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdha4O88689 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcdha4O88689 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcdha4O88689 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcdha4O88689 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC20.08■□□□□ 0.81
Pcdha4O88689 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Pcdha4O88689 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.08■□□□□ 0.81
Pcdha4O88689 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC20.08■□□□□ 0.81
Pcdha4O88689 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Pcdha4O88689 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC20.08■□□□□ 0.81
Pcdha4O88689 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcdha4O88689 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcdha4O88689 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcdha4O88689 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Pcdha4O88689 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdha4O88689 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdha4O88689 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdha4O88689 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdha4O88689 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdha4O88689 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdha4O88689 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdha4O88689 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Pcdha4O88689 Gm45560-201ENSMUST00000211492 1472 ntBASIC20.07■□□□□ 0.8
Pcdha4O88689 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdha4O88689 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.07■□□□□ 0.8
Pcdha4O88689 Mir2861-201ENSMUST00000175539 82 ntBASIC20.07■□□□□ 0.8
Pcdha4O88689 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.07■□□□□ 0.8
Pcdha4O88689 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC20.07■□□□□ 0.8
Pcdha4O88689 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Pcdha4O88689 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Pcdha4O88689 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
Pcdha4O88689 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.06■□□□□ 0.8
Pcdha4O88689 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC20.06■□□□□ 0.8
Pcdha4O88689 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
Pcdha4O88689 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Pcdha4O88689 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Pcdha4O88689 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcdha4O88689 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdha4O88689 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC20.05■□□□□ 0.8
Pcdha4O88689 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
Pcdha4O88689 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdha4O88689 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Pcdha4O88689 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdha4O88689 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdha4O88689 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
Pcdha4O88689 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdha4O88689 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdha4O88689 AC108858.1-201ENSMUST00000228461 1498 ntBASIC20.05■□□□□ 0.8
Pcdha4O88689 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdha4O88689 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcdha4O88689 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcdha4O88689 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcdha4O88689 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC20.04■□□□□ 0.8
Pcdha4O88689 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms