Protein–RNA interactions for Protein: E0CXC2

Gm28043, E3 ubiquitin-protein ligase RNF8, mousemouse

Predictions only

Length 719 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm28043E0CXC2 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Gm28043E0CXC2 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Gm28043E0CXC2 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Gm28043E0CXC2 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Gm28043E0CXC2 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Gm28043E0CXC2 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Gm28043E0CXC2 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.04■□□□□ 0.48
Gm28043E0CXC2 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Gm18671-201ENSMUST00000214826 683 ntBASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Fst-202ENSMUST00000223640 2612 ntBASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Gm28043E0CXC2 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Gm13534-201ENSMUST00000121169 513 ntBASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Gm28043E0CXC2 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC18.02■□□□□ 0.48
Gm28043E0CXC2 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Gm28043E0CXC2 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Gm28043E0CXC2 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Gm28043E0CXC2 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Gm28043E0CXC2 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Gm28043E0CXC2 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Gm28043E0CXC2 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
Gm28043E0CXC2 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Gm28043E0CXC2 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Gm28043E0CXC2 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Gm28043E0CXC2 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Gm28043E0CXC2 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Gm28043E0CXC2 Gm10849-201ENSMUST00000100397 618 ntBASIC18.01■□□□□ 0.47
Gm28043E0CXC2 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Gm28043E0CXC2 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Gm28043E0CXC2 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Gm28043E0CXC2 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Gm28043E0CXC2 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Gm28043E0CXC2 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18■□□□□ 0.47
Gm28043E0CXC2 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18■□□□□ 0.47
Gm28043E0CXC2 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Gm28043E0CXC2 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Gm28043E0CXC2 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC18■□□□□ 0.47
Gm28043E0CXC2 Gm43548-201ENSMUST00000197139 2353 ntBASIC18■□□□□ 0.47
Gm28043E0CXC2 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Gm28043E0CXC2 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Gm28043E0CXC2 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Gm28043E0CXC2 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Gm28043E0CXC2 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Gm28043E0CXC2 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18■□□□□ 0.47
Gm28043E0CXC2 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Gm28043E0CXC2 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Gm28043E0CXC2 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms