Protein–RNA interactions for Protein: Q80YF6

Upk3b, Uroplakin-3b, mousemouse

Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3bQ80YF6 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Gm19439-201ENSMUST00000198195 2273 ntBASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upk3bQ80YF6 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Gm12821-201ENSMUST00000120022 600 ntBASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Fcho2-208ENSMUST00000224992 2964 ntBASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upk3bQ80YF6 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Tgds-204ENSMUST00000228543 1594 ntBASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upk3bQ80YF6 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upk3bQ80YF6 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Upk3bQ80YF6 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upk3bQ80YF6 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Upk3bQ80YF6 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upk3bQ80YF6 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upk3bQ80YF6 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC15.27■□□□□ 0.03
Upk3bQ80YF6 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upk3bQ80YF6 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms