Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC14.86□□□□□ -0.03
Sdc1P18828 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC14.86□□□□□ -0.03
Sdc1P18828 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Sdc1P18828 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Sdc1P18828 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Sdc1P18828 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC14.85□□□□□ -0.03
Sdc1P18828 Gm9194-201ENSMUST00000220749 1447 ntBASIC14.85□□□□□ -0.03
Sdc1P18828 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Sdc1P18828 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC14.85□□□□□ -0.03
Sdc1P18828 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Sdc1P18828 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Sdc1P18828 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Sdc1P18828 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Sdc1P18828 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Sdc1P18828 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC14.84□□□□□ -0.03
Sdc1P18828 Gm5067-201ENSMUST00000170449 1009 ntBASIC14.84□□□□□ -0.03
Sdc1P18828 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC14.84□□□□□ -0.03
Sdc1P18828 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Hivep3-201ENSMUST00000084306 2973 ntBASIC14.84□□□□□ -0.03
Sdc1P18828 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Sdc1P18828 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
Sdc1P18828 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sdc1P18828 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Sdc1P18828 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC14.83□□□□□ -0.03
Sdc1P18828 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Sdc1P18828 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.03
Sdc1P18828 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
Sdc1P18828 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Gm40881-201ENSMUST00000223397 166 ntBASIC14.83□□□□□ -0.04
Sdc1P18828 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC14.83□□□□□ -0.04
Sdc1P18828 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Sdc1P18828 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Sdc1P18828 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Sdc1P18828 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Sdc1P18828 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Sdc1P18828 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Sdc1P18828 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Sdc1P18828 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Sdc1P18828 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC14.82□□□□□ -0.04
Sdc1P18828 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Sdc1P18828 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Sdc1P18828 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Sdc1P18828 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Sdc1P18828 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC14.82□□□□□ -0.04
Sdc1P18828 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Sdc1P18828 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Sdc1P18828 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC14.81□□□□□ -0.04
Sdc1P18828 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Sdc1P18828 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms