Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdx1P18111 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Cdx1P18111 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdx1P18111 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdx1P18111 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdx1P18111 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdx1P18111 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Cdx1P18111 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC14.55□□□□□ -0.08
Cdx1P18111 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC14.55□□□□□ -0.08
Cdx1P18111 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC14.55□□□□□ -0.08
Cdx1P18111 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
Cdx1P18111 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdx1P18111 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdx1P18111 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdx1P18111 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Cdx1P18111 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC14.54□□□□□ -0.08
Cdx1P18111 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Cdx1P18111 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC14.54□□□□□ -0.08
Cdx1P18111 Gm38308-201ENSMUST00000194934 1809 ntBASIC14.54□□□□□ -0.08
Cdx1P18111 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Cdx1P18111 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Cdx1P18111 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC14.53□□□□□ -0.08
Cdx1P18111 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC14.53□□□□□ -0.08
Cdx1P18111 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC14.53□□□□□ -0.08
Cdx1P18111 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC14.53□□□□□ -0.08
Cdx1P18111 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Cdx1P18111 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC14.53□□□□□ -0.08
Cdx1P18111 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cdx1P18111 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdx1P18111 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdx1P18111 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdx1P18111 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdx1P18111 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.08
Cdx1P18111 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdx1P18111 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC14.52□□□□□ -0.08
Cdx1P18111 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cdx1P18111 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC14.52□□□□□ -0.09
Cdx1P18111 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdx1P18111 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Cdx1P18111 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdx1P18111 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdx1P18111 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdx1P18111 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Cdx1P18111 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdx1P18111 Dancr-204ENSMUST00000132389 2347 ntBASIC14.52□□□□□ -0.09
Cdx1P18111 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cdx1P18111 Gm10209-201ENSMUST00000203397 1607 ntBASIC14.52□□□□□ -0.09
Cdx1P18111 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Cdx1P18111 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Cdx1P18111 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC14.51□□□□□ -0.09
Cdx1P18111 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Cdx1P18111 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
Cdx1P18111 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Cdx1P18111 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cdx1P18111 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Cdx1P18111 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cdx1P18111 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms