Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 KRT19P1-201ENST00000405746 1186 ntBASIC22.16■■□□□ 1.14
FOXN3O00409 AC034268.1-201ENST00000441047 882 ntBASIC22.16■■□□□ 1.14
FOXN3O00409 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC22.16■■□□□ 1.14
FOXN3O00409 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC22.16■■□□□ 1.14
FOXN3O00409 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
FOXN3O00409 NTF6G-201ENST00000591094 616 ntBASIC22.16■■□□□ 1.14
FOXN3O00409 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC22.16■■□□□ 1.14
FOXN3O00409 AC073314.1-201ENST00000568729 2216 ntBASIC22.16■■□□□ 1.14
FOXN3O00409 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
FOXN3O00409 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
FOXN3O00409 LINC01521-201ENST00000504184 1943 ntBASIC22.16■■□□□ 1.14
FOXN3O00409 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
FOXN3O00409 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
FOXN3O00409 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC22.15■■□□□ 1.14
FOXN3O00409 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC22.15■■□□□ 1.14
FOXN3O00409 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
FOXN3O00409 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
FOXN3O00409 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
FOXN3O00409 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
FOXN3O00409 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.15■■□□□ 1.14
FOXN3O00409 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC22.15■■□□□ 1.14
FOXN3O00409 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC22.15■■□□□ 1.14
FOXN3O00409 AC073130.3-201ENST00000624389 2278 ntBASIC22.15■■□□□ 1.14
FOXN3O00409 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
FOXN3O00409 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
FOXN3O00409 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.14■■□□□ 1.14
FOXN3O00409 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
FOXN3O00409 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
FOXN3O00409 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
FOXN3O00409 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
FOXN3O00409 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
FOXN3O00409 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.14■■□□□ 1.13
FOXN3O00409 FP700111.2-201ENST00000619190 1892 ntBASIC22.14■■□□□ 1.13
FOXN3O00409 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.13
FOXN3O00409 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
FOXN3O00409 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC22.14■■□□□ 1.13
FOXN3O00409 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
FOXN3O00409 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC22.14■■□□□ 1.13
FOXN3O00409 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
FOXN3O00409 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.14■■□□□ 1.13
FOXN3O00409 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
FOXN3O00409 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
FOXN3O00409 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC22.13■■□□□ 1.13
FOXN3O00409 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.13■■□□□ 1.13
FOXN3O00409 AP005212.1-201ENST00000581547 1997 ntBASIC22.13■■□□□ 1.13
FOXN3O00409 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
FOXN3O00409 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
FOXN3O00409 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC22.13■■□□□ 1.13
FOXN3O00409 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC22.13■■□□□ 1.13
FOXN3O00409 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC22.13■■□□□ 1.13
FOXN3O00409 SLC7A5P1-201ENST00000568957 537 ntBASIC22.13■■□□□ 1.13
FOXN3O00409 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
FOXN3O00409 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC22.13■■□□□ 1.13
FOXN3O00409 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.13■■□□□ 1.13
FOXN3O00409 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
FOXN3O00409 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
FOXN3O00409 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC22.13■■□□□ 1.13
FOXN3O00409 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.13■■□□□ 1.13
FOXN3O00409 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.13■■□□□ 1.13
FOXN3O00409 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
FOXN3O00409 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
FOXN3O00409 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
FOXN3O00409 AC019069.1-201ENST00000610008 1333 ntBASIC22.12■■□□□ 1.13
FOXN3O00409 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
FOXN3O00409 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
FOXN3O00409 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC22.12■■□□□ 1.13
FOXN3O00409 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
FOXN3O00409 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
FOXN3O00409 AC026271.2-201ENST00000428091 497 ntBASIC22.12■■□□□ 1.13
FOXN3O00409 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC22.12■■□□□ 1.13
FOXN3O00409 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
FOXN3O00409 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.12■■□□□ 1.13
FOXN3O00409 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC22.12■■□□□ 1.13
FOXN3O00409 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
FOXN3O00409 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
FOXN3O00409 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.12■■□□□ 1.13
FOXN3O00409 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
FOXN3O00409 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
FOXN3O00409 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
FOXN3O00409 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
FOXN3O00409 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
FOXN3O00409 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
FOXN3O00409 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
FOXN3O00409 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC22.11■■□□□ 1.13
FOXN3O00409 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
FOXN3O00409 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
FOXN3O00409 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC22.11■■□□□ 1.13
FOXN3O00409 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.11■■□□□ 1.13
FOXN3O00409 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.11■■□□□ 1.13
FOXN3O00409 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC22.11■■□□□ 1.13
FOXN3O00409 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
FOXN3O00409 AC027702.1-201ENST00000563810 1770 ntBASIC22.11■■□□□ 1.13
FOXN3O00409 RBM17P2-201ENST00000616397 1405 ntBASIC22.11■■□□□ 1.13
FOXN3O00409 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
FOXN3O00409 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.11■■□□□ 1.13
FOXN3O00409 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
FOXN3O00409 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
FOXN3O00409 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.11■■□□□ 1.13
FOXN3O00409 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
FOXN3O00409 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms