Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Gm43692-201ENSMUST00000198236 1062 ntBASIC18.57■□□□□ 0.56
Trim35Q8C006 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC18.57■□□□□ 0.56
Trim35Q8C006 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim35Q8C006 AC153961.1-201ENSMUST00000217760 385 ntBASIC18.57■□□□□ 0.56
Trim35Q8C006 CT010480.1-201ENSMUST00000223612 363 ntBASIC18.57■□□□□ 0.56
Trim35Q8C006 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Trim35Q8C006 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim35Q8C006 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim35Q8C006 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim35Q8C006 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim35Q8C006 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim35Q8C006 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim35Q8C006 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim35Q8C006 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim35Q8C006 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Trim35Q8C006 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Trim35Q8C006 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC18.56■□□□□ 0.56
Trim35Q8C006 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC18.56■□□□□ 0.56
Trim35Q8C006 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trim35Q8C006 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim35Q8C006 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim35Q8C006 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.56■□□□□ 0.56
Trim35Q8C006 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim35Q8C006 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Grk6-206ENSMUST00000224995 2971 ntBASIC18.55■□□□□ 0.56
Trim35Q8C006 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trim35Q8C006 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Gm13313-201ENSMUST00000118938 1084 ntBASIC18.55■□□□□ 0.56
Trim35Q8C006 Gm24380-201ENSMUST00000122696 324 ntBASIC18.55■□□□□ 0.56
Trim35Q8C006 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Gm17066-202ENSMUST00000165350 1113 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim35Q8C006 Gm44146-201ENSMUST00000203508 816 ntBASIC18.55■□□□□ 0.56
Trim35Q8C006 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC18.55■□□□□ 0.56
Trim35Q8C006 Elobl-201ENSMUST00000061938 819 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.55■□□□□ 0.56
Trim35Q8C006 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim35Q8C006 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim35Q8C006 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim35Q8C006 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
Trim35Q8C006 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim35Q8C006 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trim35Q8C006 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.54■□□□□ 0.56
Trim35Q8C006 CT010467.1-202ENSMUST00000205406 714 ntBASIC18.54■□□□□ 0.56
Trim35Q8C006 AC153512.2-201ENSMUST00000220363 1273 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim35Q8C006 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trim35Q8C006 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Trim35Q8C006 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trim35Q8C006 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim35Q8C006 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
Trim35Q8C006 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
Trim35Q8C006 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trim35Q8C006 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.53■□□□□ 0.56
Trim35Q8C006 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Trim35Q8C006 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.53■□□□□ 0.56
Trim35Q8C006 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC18.53■□□□□ 0.56
Trim35Q8C006 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.53■□□□□ 0.56
Trim35Q8C006 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trim35Q8C006 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.53■□□□□ 0.56
Trim35Q8C006 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim35Q8C006 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms