Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 CT030146.1-201ENSMUST00000220919 217 ntBASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Sh3rf1Q69ZI1 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sh3rf1Q69ZI1 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sh3rf1Q69ZI1 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sh3rf1Q69ZI1 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sh3rf1Q69ZI1 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf1Q69ZI1 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.33■□□□□ 0.52
Sh3rf1Q69ZI1 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf1Q69ZI1 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Sh3rf1Q69ZI1 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Sh3rf1Q69ZI1 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf1Q69ZI1 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf1Q69ZI1 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf1Q69ZI1 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Sh3rf1Q69ZI1 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf1Q69ZI1 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Gm38205-201ENSMUST00000192243 258 ntBASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf1Q69ZI1 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf1Q69ZI1 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
Sh3rf1Q69ZI1 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf1Q69ZI1 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms