Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Mir6349-201ENSMUST00000184059 97 ntBASIC17.79■□□□□ 0.44
Chd3B1AR17 Gm37820-201ENSMUST00000194021 2147 ntBASIC17.79■□□□□ 0.44
Chd3B1AR17 AC175538.1-201ENSMUST00000225343 1269 ntBASIC17.79■□□□□ 0.44
Chd3B1AR17 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Chd3B1AR17 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Chd3B1AR17 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Chd3B1AR17 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Chd3B1AR17 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Chd3B1AR17 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Chd3B1AR17 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Chd3B1AR17 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chd3B1AR17 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.78■□□□□ 0.44
Chd3B1AR17 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC17.78■□□□□ 0.44
Chd3B1AR17 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chd3B1AR17 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chd3B1AR17 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.78■□□□□ 0.44
Chd3B1AR17 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC17.78■□□□□ 0.44
Chd3B1AR17 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC17.78■□□□□ 0.44
Chd3B1AR17 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Chd3B1AR17 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chd3B1AR17 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Chd3B1AR17 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Chd3B1AR17 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chd3B1AR17 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chd3B1AR17 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chd3B1AR17 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chd3B1AR17 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chd3B1AR17 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Chd3B1AR17 Gm42545-201ENSMUST00000202755 922 ntBASIC17.77■□□□□ 0.44
Chd3B1AR17 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chd3B1AR17 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Chd3B1AR17 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Chd3B1AR17 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Chd3B1AR17 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Chd3B1AR17 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Chd3B1AR17 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Gm12382-201ENSMUST00000122005 922 ntBASIC17.76■□□□□ 0.43
Chd3B1AR17 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Gm7856-201ENSMUST00000117514 1493 ntBASIC17.76■□□□□ 0.43
Chd3B1AR17 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Chd3B1AR17 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Gm10138-203ENSMUST00000206952 366 ntBASIC17.75■□□□□ 0.43
Chd3B1AR17 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Chd3B1AR17 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC17.75■□□□□ 0.43
Chd3B1AR17 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
Chd3B1AR17 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Chd3B1AR17 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.75■□□□□ 0.43
Chd3B1AR17 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Chd3B1AR17 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Chd3B1AR17 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.74■□□□□ 0.43
Chd3B1AR17 Gm15565-201ENSMUST00000118890 427 ntBASIC17.74■□□□□ 0.43
Chd3B1AR17 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.74■□□□□ 0.43
Chd3B1AR17 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Chd3B1AR17 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chd3B1AR17 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC17.74■□□□□ 0.43
Chd3B1AR17 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Chd3B1AR17 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chd3B1AR17 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Chd3B1AR17 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Chd3B1AR17 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Chd3B1AR17 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC17.73■□□□□ 0.43
Chd3B1AR17 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Chd3B1AR17 AC124581.1-201ENSMUST00000225416 1399 ntBASIC17.73■□□□□ 0.43
Chd3B1AR17 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chd3B1AR17 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Chd3B1AR17 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chd3B1AR17 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Chd3B1AR17 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.73■□□□□ 0.43
Chd3B1AR17 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Chd3B1AR17 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chd3B1AR17 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC17.72■□□□□ 0.43
Chd3B1AR17 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chd3B1AR17 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms