Protein–RNA interactions for Protein: A0A140LIX9

Cfap99, Cilia and flagella-associated protein 99, mousemouse

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cfap99A0A140LIX9 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cfap99A0A140LIX9 AL672049.1-201ENSMUST00000197943 91 ntBASIC21.68■■□□□ 1.06
Cfap99A0A140LIX9 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Cfap99A0A140LIX9 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC21.68■■□□□ 1.06
Cfap99A0A140LIX9 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cfap99A0A140LIX9 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC21.68■■□□□ 1.06
Cfap99A0A140LIX9 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC21.67■■□□□ 1.06
Cfap99A0A140LIX9 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cfap99A0A140LIX9 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cfap99A0A140LIX9 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cfap99A0A140LIX9 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cfap99A0A140LIX9 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cfap99A0A140LIX9 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cfap99A0A140LIX9 Gm15378-201ENSMUST00000121894 207 ntBASIC21.66■■□□□ 1.06
Cfap99A0A140LIX9 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cfap99A0A140LIX9 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Cfap99A0A140LIX9 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cfap99A0A140LIX9 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cfap99A0A140LIX9 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Cfap99A0A140LIX9 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Cfap99A0A140LIX9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Gm2399-201ENSMUST00000104944 225 ntBASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 AC153881.1-201ENSMUST00000214448 284 ntBASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cfap99A0A140LIX9 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Gm10698-201ENSMUST00000182663 604 ntBASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Gm29994-201ENSMUST00000195495 1193 ntBASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cfap99A0A140LIX9 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cfap99A0A140LIX9 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Gm15847-201ENSMUST00000121417 1065 ntBASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 H2-K2-201ENSMUST00000174250 1049 ntBASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cfap99A0A140LIX9 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 Gm43672-201ENSMUST00000199072 1731 ntBASIC21.6■■□□□ 1.05
Cfap99A0A140LIX9 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms