Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Trim28Q62318 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Tgds-204ENSMUST00000228543 1594 ntBASIC23.79■■□□□ 1.4
Trim28Q62318 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim28Q62318 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim28Q62318 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Trim28Q62318 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Trim28Q62318 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC23.78■■□□□ 1.4
Trim28Q62318 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Trim28Q62318 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim28Q62318 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim28Q62318 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Trim28Q62318 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim28Q62318 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim28Q62318 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim28Q62318 Gm16042-201ENSMUST00000204813 1247 ntBASIC23.77■■□□□ 1.4
Trim28Q62318 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim28Q62318 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim28Q62318 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Trim28Q62318 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim28Q62318 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim28Q62318 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim28Q62318 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim28Q62318 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Trim28Q62318 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Trim28Q62318 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
Trim28Q62318 Gm15565-201ENSMUST00000118890 427 ntBASIC23.76■■□□□ 1.39
Trim28Q62318 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim28Q62318 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Trim28Q62318 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Trim28Q62318 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim28Q62318 Golph3-205ENSMUST00000228671 2842 ntBASIC23.75■■□□□ 1.39
Trim28Q62318 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Mir7071-201ENSMUST00000184847 69 ntBASIC23.75■■□□□ 1.39
Trim28Q62318 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC23.75■■□□□ 1.39
Trim28Q62318 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Trim28Q62318 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trim28Q62318 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Trim28Q62318 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim28Q62318 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
Trim28Q62318 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC23.74■■□□□ 1.39
Trim28Q62318 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
Trim28Q62318 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC23.74■■□□□ 1.39
Trim28Q62318 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC23.74■■□□□ 1.39
Trim28Q62318 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim28Q62318 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trim28Q62318 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC23.74■■□□□ 1.39
Trim28Q62318 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Trim28Q62318 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim28Q62318 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC23.73■■□□□ 1.39
Trim28Q62318 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim28Q62318 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC23.73■■□□□ 1.39
Trim28Q62318 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Trim28Q62318 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim28Q62318 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Trim28Q62318 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim28Q62318 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Trim28Q62318 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim28Q62318 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trim28Q62318 Gm7712-202ENSMUST00000222331 1510 ntBASIC23.73■■□□□ 1.39
Trim28Q62318 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC23.73■■□□□ 1.39
Trim28Q62318 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC23.72■■□□□ 1.39
Trim28Q62318 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
Trim28Q62318 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Trim28Q62318 Gm12382-201ENSMUST00000122005 922 ntBASIC23.72■■□□□ 1.39
Trim28Q62318 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Trim28Q62318 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC23.72■■□□□ 1.39
Trim28Q62318 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim28Q62318 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
Trim28Q62318 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim28Q62318 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim28Q62318 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim28Q62318 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim28Q62318 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim28Q62318 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC23.72■■□□□ 1.39
Trim28Q62318 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Trim28Q62318 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim28Q62318 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Trim28Q62318 Krtap5-1-202ENSMUST00000188274 742 ntBASIC23.71■■□□□ 1.39
Trim28Q62318 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim28Q62318 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim28Q62318 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
Trim28Q62318 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim28Q62318 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms