Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1h4Q60641 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nr1h4Q60641 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Nr1h4Q60641 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nr1h4Q60641 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nr1h4Q60641 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Nr1h4Q60641 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.33■□□□□ 0.37
Nr1h4Q60641 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nr1h4Q60641 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nr1h4Q60641 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Gm12821-201ENSMUST00000120022 600 ntBASIC17.32■□□□□ 0.36
Nr1h4Q60641 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.32■□□□□ 0.36
Nr1h4Q60641 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.32■□□□□ 0.36
Nr1h4Q60641 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nr1h4Q60641 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nr1h4Q60641 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.3■□□□□ 0.36
Nr1h4Q60641 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Gm26833-201ENSMUST00000180899 440 ntBASIC17.3■□□□□ 0.36
Nr1h4Q60641 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Gm5828-201ENSMUST00000071842 1860 ntBASIC17.3■□□□□ 0.36
Nr1h4Q60641 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nr1h4Q60641 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1h4Q60641 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Gm38205-201ENSMUST00000192243 258 ntBASIC17.29■□□□□ 0.36
Nr1h4Q60641 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1h4Q60641 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nr1h4Q60641 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nr1h4Q60641 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms