Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col5a1O88207 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col5a1O88207 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC16.53■□□□□ 0.24
Col5a1O88207 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col5a1O88207 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col5a1O88207 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Col5a1O88207 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col5a1O88207 Timm23-208ENSMUST00000226683 750 ntBASIC16.52■□□□□ 0.24
Col5a1O88207 Odf3b-204ENSMUST00000227834 930 ntBASIC16.52■□□□□ 0.24
Col5a1O88207 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col5a1O88207 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Col5a1O88207 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col5a1O88207 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col5a1O88207 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col5a1O88207 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col5a1O88207 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Col5a1O88207 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC16.52■□□□□ 0.23
Col5a1O88207 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC16.52■□□□□ 0.23
Col5a1O88207 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col5a1O88207 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
Col5a1O88207 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col5a1O88207 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.52■□□□□ 0.23
Col5a1O88207 Gm18959-201ENSMUST00000208954 655 ntBASIC16.52■□□□□ 0.23
Col5a1O88207 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col5a1O88207 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col5a1O88207 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col5a1O88207 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col5a1O88207 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC16.51■□□□□ 0.23
Col5a1O88207 Gm44544-201ENSMUST00000207052 1844 ntBASIC16.51■□□□□ 0.23
Col5a1O88207 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col5a1O88207 BC021767-201ENSMUST00000126387 1716 ntBASIC16.51■□□□□ 0.23
Col5a1O88207 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col5a1O88207 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC16.51■□□□□ 0.23
Col5a1O88207 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col5a1O88207 Gm43231-201ENSMUST00000202960 2258 ntBASIC16.51■□□□□ 0.23
Col5a1O88207 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col5a1O88207 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col5a1O88207 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Col5a1O88207 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col5a1O88207 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col5a1O88207 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col5a1O88207 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.5■□□□□ 0.23
Col5a1O88207 Gm43183-201ENSMUST00000200632 547 ntBASIC16.5■□□□□ 0.23
Col5a1O88207 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col5a1O88207 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Col5a1O88207 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col5a1O88207 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.5■□□□□ 0.23
Col5a1O88207 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col5a1O88207 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col5a1O88207 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Col5a1O88207 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Col5a1O88207 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.49■□□□□ 0.23
Col5a1O88207 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Col5a1O88207 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC16.49■□□□□ 0.23
Col5a1O88207 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Col5a1O88207 Gm14859-201ENSMUST00000117752 357 ntBASIC16.49■□□□□ 0.23
Col5a1O88207 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Gm37292-201ENSMUST00000192062 758 ntBASIC16.49■□□□□ 0.23
Col5a1O88207 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC16.49■□□□□ 0.23
Col5a1O88207 AC159205.6-201ENSMUST00000224935 887 ntBASIC16.49■□□□□ 0.23
Col5a1O88207 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC16.49■□□□□ 0.23
Col5a1O88207 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col5a1O88207 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC16.48■□□□□ 0.23
Col5a1O88207 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col5a1O88207 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.47■□□□□ 0.23
Col5a1O88207 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col5a1O88207 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Col5a1O88207 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col5a1O88207 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
Col5a1O88207 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col5a1O88207 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col5a1O88207 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col5a1O88207 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col5a1O88207 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC16.47■□□□□ 0.23
Col5a1O88207 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC16.47■□□□□ 0.23
Col5a1O88207 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.47■□□□□ 0.23
Col5a1O88207 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col5a1O88207 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col5a1O88207 Rncr4-201ENSMUST00000194541 2234 ntBASIC16.47■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms