Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Gm13234-201ENSMUST00000120010 747 ntBASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdhgb8A0A140LI48 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdhgb8A0A140LI48 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdhgb8A0A140LI48 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdhgb8A0A140LI48 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdhgb8A0A140LI48 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdhgb8A0A140LI48 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdhgb8A0A140LI48 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdhgb8A0A140LI48 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdhgb8A0A140LI48 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC16.41■□□□□ 0.22
Pcdhgb8A0A140LI48 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdhgb8A0A140LI48 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 AC154266.1-201ENSMUST00000223190 503 ntBASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Pcdhgb8A0A140LI48 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 AA386476-201ENSMUST00000098781 1665 ntBASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Gm37179-201ENSMUST00000194862 823 ntBASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Gm5297-201ENSMUST00000198555 1171 ntBASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Pcdhgb8A0A140LI48 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Pcdhgb8A0A140LI48 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdhgb8A0A140LI48 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdhgb8A0A140LI48 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms