Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim54Q9ERP3 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim54Q9ERP3 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim54Q9ERP3 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim54Q9ERP3 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Krtap5-1-202ENSMUST00000188274 742 ntBASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Gm37055-201ENSMUST00000191866 133 ntBASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Zfp783-201ENSMUST00000095946 670 ntBASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim54Q9ERP3 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 AC135963.1-201ENSMUST00000211640 717 ntBASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim54Q9ERP3 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Gm15565-201ENSMUST00000118890 427 ntBASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim54Q9ERP3 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim54Q9ERP3 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.69■□□□□ 0.74
Trim54Q9ERP3 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim54Q9ERP3 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Gm13836-201ENSMUST00000121159 501 ntBASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms