Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc38Q8CDN8 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc38Q8CDN8 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc38Q8CDN8 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc38Q8CDN8 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc38Q8CDN8 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc38Q8CDN8 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc38Q8CDN8 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc38Q8CDN8 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc38Q8CDN8 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc38Q8CDN8 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.27■□□□□ 0.84
Ccdc38Q8CDN8 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Ccdc38Q8CDN8 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
Ccdc38Q8CDN8 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Ccdc38Q8CDN8 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 Gm6420-201ENSMUST00000193885 723 ntBASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc38Q8CDN8 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc38Q8CDN8 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc38Q8CDN8 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Ccdc38Q8CDN8 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Gm43672-201ENSMUST00000199072 1731 ntBASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Nespas-201ENSMUST00000143738 1083 ntBASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc38Q8CDN8 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Ccdc38Q8CDN8 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc38Q8CDN8 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc38Q8CDN8 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Ccdc38Q8CDN8 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc38Q8CDN8 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Ccdc38Q8CDN8 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Gm7514-201ENSMUST00000209475 934 ntBASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc38Q8CDN8 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms