Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19■□□□□ 0.63
Ccdc40Q8BI79 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19■□□□□ 0.63
Ccdc40Q8BI79 Gm19094-201ENSMUST00000209791 1246 ntBASIC19■□□□□ 0.63
Ccdc40Q8BI79 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Ccdc40Q8BI79 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc40Q8BI79 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc40Q8BI79 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc40Q8BI79 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc40Q8BI79 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc40Q8BI79 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc40Q8BI79 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc40Q8BI79 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc40Q8BI79 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Gm26971-201ENSMUST00000182423 1072 ntBASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.94■□□□□ 0.62
Ccdc40Q8BI79 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms